Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g01339 ATGACTACATTAGCTAGTGCTTCTGAAATTGTTGAATCAACAGAAGAATTTGATTCTGAGAAAGCTGGGACAAGTTACACGATAGATGTAGGAAAAAGGTTTTCAATAGAGGATGACATTAATCGTCTGTTTCAGGCAATTGATATCAGAACATTATGTAACAGGTCAGGTCAGCAACATGGAGTTGATAAAGATGCGTTGCAAAAGAGTGCGATGAAGAGACCGATGAGAGTGGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAGCCTGCAAGCTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCTGCAAAGAGGTTAACAAGGTCTTTAGGTTCACCTGGAATCTCTGAAGCAGGAACTATTAAAAGGTTGTATAAGGCTGTGGTGGTTGAGGCCAGTGGATCTGATGTGCGAATAAATGAAAGCAAAGAAAATTTGGTAGAAATTTCCTTTGTTTCAGAAAGAATTATGTCTACTTTTCAGAATAAGATGCCTGAATTGTTGCATAAAACTGAGGCAGATATATCAAACCAGGGTGCTGAGTCTTCACCTTTTAAGAACACTGGGGTATCAGAAGAGGCAAATGTGGATAGATTGATGTCAAAGGATCTTGTAGAAGTGACAAGTATAAAGCCACTTAAATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTGACTCTGAACAGCTTGGATAATTCCTCAACTGAAGATTTGGCAAAAAATTCAGTGCCAGAGGAGAAAGGTACAATGCGTTGTTTATCCTCTCTATCAAGCTCTGGATCTGTTATTTGGCCGAACAAATCAGCTTTCAATAATACACGTTTCGTCAAACCTATTTTCAGGATCAAAAACTCTGTCAAGAAGAAAGCAAAACTTGAACCCATTTCCTCCCCTAGCACGTTTGAAATGCGTACAGTGATGGTTGACACTGATTTGGGTTCCATAGCAGAAAAGTTTGAGAACCGAATGCCAGAAAATGCCCAGAATCATGAGAGTAAAGAAAAAGAGATAGGTTCCTCTATCTCCAGTAGCACAACTTTAGGTATTGAAGTAAGTGCAAATCTGGTAAACACAGAGTCCAGTGGACCTGGTACATCTCTCAACTGCTGTAACAGGATCAAACCAACTATTATGCCATTCAATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTAGTATTGGTGAATGTAGCCATAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTTGTAGTGGAGTAAGGCCTCACATGTCAAAGGACTTGAAATGGGAATCTATCCACCATATTCAAGATCAACATAAATGCCTAAGTCTGAAAAACTTCAATCTGTTAAGGAGACTTGGTCTCGGGGACATTGGGACTGTATATCTCTCTGAGCTATGCGATTCTAGCTGTCTATTTGCTATCAAAGTGATGGACAAGGAGTTCTTGGCAAGCAGAAAAAAAATACTTCGGGCACAAACTGAGAGAGAGATACTGGAAATACTTGACCATCCATTTCTCCCTACACTATATGCTCATTTTGAGACGGATGAGCAATCATGCTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCATGTGCTGCAACAAAAGCAACCATGCAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAGATTCTTCTTGCCCTGGAGTATTTACACATGCTAGGCGTTATTTACCGAAACCTGAAACCCGAAAATGTTCTGGTTCGAGAAGATGGACACATAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGCTGTTAATCCAATGCTGCTTCAATCATCATCTCCAGTTGTGGAATCCACCAAGAGGAAGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCATTTCTGCCTCCACCCATCCTGGCAGGTCTCATGCTTCACCCCCAAAGTTTTATCTGCTCCATACAAATCTCGGAGAACAAAAGCAGACAATCAAGCTAGTCTATTACCACAGCTTATTGTCGAGCCAACTGGTGTGCAGTCCAATTCATTTGTTGGAACCCACGAATACCTCGCCCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTACGGGATTTTCCTGTTTGAGCTACTCTATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCACACTCTCAAGTTCCCCGATAGCCCCATAGTTAGCTTTCATGCCAGAGATCTAATCAGATGTCTGTTGGCAAAGGAGCCTGAAAACCGATTAGGCGCAACAAAAGGAGCTATTGAGATTAAGCAGCATCCATTTTTTGAAGGCATCAATTGGGCTCTGATACGTTGTGCAGTTCCACCTGAGCTTCCCAAGTTCTTCGACGATGGAACTGGTGCAATGCCAGTGGATCCCGGGGAGAACAGAAAGTGTAGAGATCTCGAGAATATGGAAGCGGATGCAGCAATCTTCGACCTGTTTTAG 2532 42.61 MTTLASASEIVESTEEFDSEKAGTSYTIDVGKRFSIEDDINRLFQAIDIRTLCNRSGQQHGVDKDALQKSAMKRPMRVGSSHMAGIGISEPASLKQALRGLCISQAAAKRLTRSLGSPGISEAGTIKRLYKAVVVEASGSDVRINESKENLVEISFVSERIMSTFQNKMPELLHKTEADISNQGAESSPFKNTGVSEEANVDRLMSKDLVEVTSIKPLKSPSFTPSGEKDLTLNSLDNSSTEDLAKNSVPEEKGTMRCLSSLSSSGSVIWPNKSAFNNTRFVKPIFRIKNSVKKKAKLEPISSPSTFEMRTVMVDTDLGSIAEKFENRMPENAQNHESKEKEIGSSISSSTTLGIEVSANLVNTESSGPGTSLNCCNRIKPTIMPFNERSRSREKGMFSQSSKSSSIGECSHSPSISGESILSGSSCSGVRPHMSKDLKWESIHHIQDQHKCLSLKNFNLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILEILDHPFLPTLYAHFETDEQSCLVMDYCPGGDLHVLQQKQPCKSFSEHAVRFYVAEILLALEYLHMLGVIYRNLKPENVLVREDGHIMLTDFDLSLRCAVNPMLLQSSSPVVESTKRKLNPCDESSCIDHFCLHPSWQVSCFTPKVLSAPYKSRRTKADNQASLLPQLIVEPTGVQSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSHTLKFPDSPIVSFHARDLIRCLLAKEPENRLGATKGAIEIKQHPFFEGINWALIRCAVPPELPKFFDDGTGAMPVDPGENRKCRDLENMEADAAIFDLF 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7843244 7846243 + CmaCh02G013390.1 Cma02g01339 289090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g01339 843 CDD STKc_phototropin_like 456 808 - -
Cma02g01339 843 SUPERFAMILY Protein kinase-like (PK-like) 433 808 IPR011009 -
Cma02g01339 843 MobiDBLite consensus disorder prediction 389 428 - -
Cma02g01339 843 Gene3D Phosphorylase Kinase; domain 1 458 541 - -
Cma02g01339 843 MobiDBLite consensus disorder prediction 221 245 - -
Cma02g01339 843 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 816 - -
Cma02g01339 843 MobiDBLite consensus disorder prediction 221 252 - -
Cma02g01339 843 PANTHER FLIPPASE KINASE 1-RELATED 1 816 - -
Cma02g01339 843 MobiDBLite consensus disorder prediction 397 428 - -
Cma02g01339 843 ProSiteProfiles Protein kinase domain profile. 458 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01339 843 Gene3D Transferase(Phosphotransferase) domain 1 542 799 - -
Cma02g01339 843 Pfam Protein kinase domain 459 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g01339 843 Pfam Protein kinase domain 686 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01339 Cma20g00180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01339 Cma-Chr2:7843244 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma02g01337 Cma-Chr2:7835428 Cma02g01339 Cma-Chr2:7843244 3.52E-135 proximal
Cma02g01339 Cma-Chr2:7843244 Cma03g01169 Cma-Chr3:7831679 0 wgd
Cma02g01339 Cma-Chr2:7843244 Cma07g00864 Cma-Chr7:4029515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68372 PF00069 Pkinase 1.50E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g01339 - - cpep:111777395 1341.25