Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0507 | GTTCTGTTTGGTAAATATGAGATTGGGAGGTTACTTGGGAAGGGGACTTTTGCTAAGGTCTATTATGGTAAAGAATTGGAGTCTGGCGAAAGTGTGGCGATCAAGGTGATTAACAAGGACCAGGTCAAGAAGGAAGGGATGATGGAACAGATCAAGCGTGAGATCTCCGTGATGCATCTCGTTCGCCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACTAAGACGAAGATCTTCTTCGTCATGGATTATGTTCGCGGCGGCGAGCTATTTTCCAAGGTTGCCAGAGGTAAACTCAAGGAAGATGTGGCTCGCAAGTATTTTCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCGGAGAATCTATTGCTGGACGAGAACGGAGATCTCAAGATCTCCGACTTCGGACTCTCCGCCCTACCAGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTATGTCTCACCAGAAGTACTAAAAAGAAAGGGCTACGACGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTACTGGCAGGATTCCTTCCATTTCAGGACGAGAACATCATCACTATGTATAAGAAGGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAAGCCAAGCGGTTAATTTCAAAGATACTCGTTGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGCGTTCCTTGGTTTCGGAAAGACTTCTCCAGATCGCTCTCGTTCACGATGAAAGAAATCATCGCAGCGAAAACAGAGGACTCCGATTCCGATTCCGAGAGTTCGAAACTGTCGACGCCAAAATTCTTCAATGCGTTCGAGTTAATTTCGTCGATGTCGTCCGGATTCGATCTGTCGAGCTTGTTCGAGAACGAAAGGAAGAGCGGATCCATGTTCACATCTCGATGCTCGGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTATCAGAAGTGAAAGACTTCAAGCTACGGCTGCAAGGTCCGACGGAGGGACACAAAGGAAAGCTATCTGTGACGGCGGAGGTATTCGAGATAGCGCCGGAAGTTGCCATCGTCGAATTTTCGAAGTCGTCCGGCGATACTTTGGAATATTCGAAGTTCTGTGAAGACGACGTCCGGCCTGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAT | 1266 | 49.21 | VLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVINKDQVKKEGMMEQIKREISVMHLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFSKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVSPEVLKRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIITMYKKVFKAEFECPPWFSAEAKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKTEDSDSDSESSKLSTPKFFNAFELISSMSSGFDLSSLFENERKSGSMFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGPTEGHKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEDDVRPALKDIVWTWQGD | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3220558 | 3221823 | - | MC11g0411 | Mch11g0507 | 679441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0507 | 422 | SMART | serkin_6 | 6 | 260 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch11g0507 | 422 | CDD | CIPK_C | 299 | 413 | - | - | |
Mch11g0507 | 422 | CDD | STKc_SnRK3 | 5 | 259 | - | - | |
Mch11g0507 | 422 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - | |
Mch11g0507 | 422 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 2 | 409 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Mch11g0507 | 422 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 124 | 136 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch11g0507 | 422 | ProSiteProfiles | NAF domain profile. | 293 | 318 | IPR018451 | GO:0007165(InterPro) | |
Mch11g0507 | 422 | ProSiteProfiles | Protein kinase domain profile. | 6 | 260 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch11g0507 | 422 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 267 | - | - | |
Mch11g0507 | 422 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Mch11g0507 | 422 | Gene3D | Kinase associated domain 1, KA1 | 293 | 418 | - | - | |
Mch11g0507 | 422 | Pfam | Protein kinase domain | 6 | 260 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch11g0507 | 422 | FunFam | Non-specific serine/threonine protein kinase | 1 | 296 | - | - | |
Mch11g0507 | 422 | FunFam | Non-specific serine/threonine protein kinase | 293 | 417 | - | - | |
Mch11g0507 | 422 | Pfam | NAF domain | 295 | 351 | IPR004041 | GO:0007165(InterPro) | |
Mch11g0507 | 422 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 311 | IPR011009 | - | |
Mch11g0507 | 422 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 85 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0507 | Mch-Chr11:3220558 | Mch2g0797 | Mch-Chr2:5493232 | 8.30E-169 | dispersed | |
Mch11g0507 | Mch-Chr11:3220558 | Mch6g0631 | Mch-Chr6:4301878 | 1.32E-173 | wgd | |
Mch11g0507 | Mch-Chr11:3220558 | Mch8g1066 | Mch-Chr8:7538333 | 1.48E-213 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77049 | PF00069 | Pkinase | 8.90E-75 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0507 | - | - | - | 0.0 |