Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0507 GTTCTGTTTGGTAAATATGAGATTGGGAGGTTACTTGGGAAGGGGACTTTTGCTAAGGTCTATTATGGTAAAGAATTGGAGTCTGGCGAAAGTGTGGCGATCAAGGTGATTAACAAGGACCAGGTCAAGAAGGAAGGGATGATGGAACAGATCAAGCGTGAGATCTCCGTGATGCATCTCGTTCGCCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACTAAGACGAAGATCTTCTTCGTCATGGATTATGTTCGCGGCGGCGAGCTATTTTCCAAGGTTGCCAGAGGTAAACTCAAGGAAGATGTGGCTCGCAAGTATTTTCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCGGAGAATCTATTGCTGGACGAGAACGGAGATCTCAAGATCTCCGACTTCGGACTCTCCGCCCTACCAGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCGTATGTCTCACCAGAAGTACTAAAAAGAAAGGGCTACGACGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTACTGGCAGGATTCCTTCCATTTCAGGACGAGAACATCATCACTATGTATAAGAAGGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAAGCCAAGCGGTTAATTTCAAAGATACTCGTTGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGCGTTCCTTGGTTTCGGAAAGACTTCTCCAGATCGCTCTCGTTCACGATGAAAGAAATCATCGCAGCGAAAACAGAGGACTCCGATTCCGATTCCGAGAGTTCGAAACTGTCGACGCCAAAATTCTTCAATGCGTTCGAGTTAATTTCGTCGATGTCGTCCGGATTCGATCTGTCGAGCTTGTTCGAGAACGAAAGGAAGAGCGGATCCATGTTCACATCTCGATGCTCGGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTATCAGAAGTGAAAGACTTCAAGCTACGGCTGCAAGGTCCGACGGAGGGACACAAAGGAAAGCTATCTGTGACGGCGGAGGTATTCGAGATAGCGCCGGAAGTTGCCATCGTCGAATTTTCGAAGTCGTCCGGCGATACTTTGGAATATTCGAAGTTCTGTGAAGACGACGTCCGGCCTGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAT 1266 49.21 VLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVINKDQVKKEGMMEQIKREISVMHLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFSKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVSPEVLKRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIITMYKKVFKAEFECPPWFSAEAKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKTEDSDSDSESSKLSTPKFFNAFELISSMSSGFDLSSLFENERKSGSMFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGPTEGHKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEDDVRPALKDIVWTWQGD 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3220558 3221823 - MC11g0411 Mch11g0507 679441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0507 422 SMART serkin_6 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0507 422 CDD CIPK_C 299 413 - -
Mch11g0507 422 CDD STKc_SnRK3 5 259 - -
Mch11g0507 422 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Mch11g0507 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 409 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch11g0507 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0507 422 ProSiteProfiles NAF domain profile. 293 318 IPR018451 GO:0007165(InterPro)
Mch11g0507 422 ProSiteProfiles Protein kinase domain profile. 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0507 422 Gene3D Transferase(Phosphotransferase) domain 1 86 267 - -
Mch11g0507 422 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Mch11g0507 422 Gene3D Kinase associated domain 1, KA1 293 418 - -
Mch11g0507 422 Pfam Protein kinase domain 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0507 422 FunFam Non-specific serine/threonine protein kinase 1 296 - -
Mch11g0507 422 FunFam Non-specific serine/threonine protein kinase 293 417 - -
Mch11g0507 422 Pfam NAF domain 295 351 IPR004041 GO:0007165(InterPro)
Mch11g0507 422 SUPERFAMILY Protein kinase-like (PK-like) 2 311 IPR011009 -
Mch11g0507 422 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0507 Mch-Chr11:3220558 Mch2g0797 Mch-Chr2:5493232 8.30E-169 dispersed
Mch11g0507 Mch-Chr11:3220558 Mch6g0631 Mch-Chr6:4301878 1.32E-173 wgd
Mch11g0507 Mch-Chr11:3220558 Mch8g1066 Mch-Chr8:7538333 1.48E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77049 PF00069 Pkinase 8.90E-75 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0507 - - - 0.0