Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g0912 ATGAAGACGCCGGCGAACGGTGCCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCCCAAATCCCAAACTACCCCAATCTTCCTTCCAAGTTACTATGTCTGCTTCATAATGTAACTTTACATGCTGACCCAGAAACAGATGAAGTGTATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGACTTCTCAATGCAACCACCTGCTCAAGAGCTTGTTGCTAAGGATTTGCATGATACTGTATGGACTTTCCGCCACATATATCGAGGACAACCGAAACGTCATTTGCTGACGACCGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCAAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCGAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAACAGCCCTTTTACTGTTTTTTACAACCCGAGAGCAAGCCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTGTCTGCAAACCAAATATCGCTTGGCATGCGCTTTCGGATGATGTTCGAGACTGAAGAGTCTGGAACAAGAAGGTATATGGGCACTATCACAGGCATAAGTGATCTCGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCAACTGGAGGAGAAAGACGAAACCGAGTCTCAATATGGGAGATCGAACCTGTTATTGCTCCATTTTTTATTTGTCCCCCTCCTTTTTTGAGATCGAAACGTCCAAGGCAACCGGGAATGCCAGATGACGATACCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTCTGCATGAAAGATCCACAGGGATATCCCGGCCTAAACTTAGTTCAGTGGATGAATATGCAAAACCCTTCGCTTTCTAATTCGATGCAGCCAAATTACATGCATTCGTTTTCTGGTTCTATGCTTCCAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGCATGTCAAATACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAAGCTCAACAGTTAGATCAGCTACCTAAGATACCAACGACTATGAACTCAATGGGGTCCGTTGTGCAGCCACCGCAACAGTTGGATGATATGTCTCAGCAGACACGGCAGAATTTGATTAACCAGAATGCAGTCTCGGGCCAGATTCAGGCTCAAATAATGCAGCAGCCTCATGCTAATGGAATCCTGCAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAGCAACATCAGCAAATTTTGGGTCAGAATCAACAGCAGAATATGAATCAGCCCCCGATCCCGGATCAGTTAAATCATCAGTTGCAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAACAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTTGCCCAACTCCCAGAACAGCAGAGACAGTTGGTAGATGTGTCCCAAAGCTTTTCCAGGTCCATGTCGTCTAACCAAATGCTCGACATGTCTCAATCTACCCCAGCTGCAGTCCCTCCATCAAATGTGTTACCACAGCAGGCAGCAAAGAGCAATAGCCAGACGAATAACCGGTTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAGCTACAGCAACCGACTCCATCTGCTGTACTTTCTGATATGTCTAGGCCAATGGGACTTCCTCCAACCCAAACGAACAATCAGCTCTCTGCAGCTACTAGTAGTATAATAACAGGAGTAGCGGGGGCAGGCCAATCTGGAATCACCGACGACATACCATCTTGCTCCACATCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGATAACGAATGGACGGGTTCACCGAAGCACGGGATTGGTTGATGATGTTGCTCAATCTGCTGCAACAATATTCAGTTCGAATACCTTGGATACCATGTCACCAAATCCCAACTTAGTTAATAAAGATTTGCCACAGAAAGCTGCCGTTAAACCTTCACTGAATATTTCCAAGAATCAAAACCATGGAATTTTTGGACAACAAACTTTCTTGAGCAGTGCCATTGCGCAGACGGATTTCTTGGACACGTCATCGTCCACCACCTCGGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAACAACATGATGTCGTTCAACTCACAGCCAATGTTGTTTAGAGATGGTACTCAGGATTTGGAAGTACCAACGGATCTTCATAACATTCCGTACGGGACTAATGTCGATGGACAGTTGGTAGCGCAGTTAAATTCCAATCCTTTGTTAAACAAGGACATTGGAGGGTTGGGGAAGGATTACTCCAATAATTTCTCTTCTGGAGGCATGCTTGCCACATACGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCGTTTGGTATTCCGGACATGACATTTAATTCCATGGATTCAACAATAAATGATAGCGCCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCGTTTCAGCGTATGCGAACCTATACCAAGGTGTACAAACGTGGAGCCGTTGGGAGATCTATTGATATTACTCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTCGGTATCGAGGGACAATTAGAAGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTCGATCATGAAAATGATGTTTTACTCGTAGGCGACGATCCTTGGGAGGACTTTGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCCTGGATGGAGATTTTGGCAACGGGGTCCTACCGAATCAAGCCTGCAGTAGCTCGGATGGTGGAAATGCTTAA 3324 46.09 MKTPANGAASSAAAPNSCEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDTSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGMSNTQIPQSNNIQFNAQRLLSQAQQLDQLPKIPTTMNSMGSVVQPPQQLDDMSQQTRQNLINQNAVSGQIQAQIMQQPHANGILQQQTSLQNQQLQRSLPQNLQMQQHQQILGQNQQQNMNQPPIPDQLNHQLQMSDNQVQMQMLQKLQQQQQSLLAQQSALQPAQLAQLPEQQRQLVDVSQSFSRSMSSNQMLDMSQSTPAAVPPSNVLPQQAAKSNSQTNNRFSNQHLQPKLPQLQQPTPSAVLSDMSRPMGLPPTQTNNQLSAATSSIITGVAGAGQSGITDDIPSCSTSPSTNNCPSLVQPITNGRVHRSTGLVDDVAQSAATIFSSNTLDTMSPNPNLVNKDLPQKAAVKPSLNISKNQNHGIFGQQTFLSSAIAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGTQDLEVPTDLHNIPYGTNVDGQLVAQLNSNPLLNKDIGGLGKDYSNNFSSGGMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12853855 12862783 + Tan0008041.1 Tan08g0912 760804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g0912 1107 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Tan08g0912 1107 ProSiteProfiles PB1 domain profile. 995 1080 IPR053793 -
Tan08g0912 1107 MobiDBLite consensus disorder prediction 565 593 - -
Tan08g0912 1107 FunFam Auxin response factor 298 369 - -
Tan08g0912 1107 FunFam Auxin response factor 990 1084 - -
Tan08g0912 1107 FunFam Auxin response factor 132 236 - -
Tan08g0912 1107 MobiDBLite consensus disorder prediction 644 725 - -
Tan08g0912 1107 SUPERFAMILY CAD & PB1 domains 1008 1074 - -
Tan08g0912 1107 SMART B3_2 134 236 IPR003340 GO:0003677(InterPro)
Tan08g0912 1107 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
Tan08g0912 1107 Gene3D - 298 368 - -
Tan08g0912 1107 Gene3D - 132 235 IPR015300 -
Tan08g0912 1107 Pfam Auxin response factor 260 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan08g0912 1107 Pfam AUX/IAA family 994 1080 IPR033389 -
Tan08g0912 1107 Gene3D - 991 1084 - -
Tan08g0912 1107 Pfam B3 DNA binding domain 134 236 IPR003340 GO:0003677(InterPro)
Tan08g0912 1107 MobiDBLite consensus disorder prediction 644 709 - -
Tan08g0912 1107 CDD B3_DNA 133 225 IPR003340 GO:0003677(InterPro)
Tan08g0912 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 1086 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2676 Tan-Chr5:78180676 Tan08g0912 Tan-Chr8:12853855 1.10E-167 dispersed
Tan08g0003 Tan-Chr8:204155 Tan08g0912 Tan-Chr8:12853855 1.10E-227 dispersed
Tan08g0004 Tan-Chr8:206929 Tan08g0912 Tan-Chr8:12853855 8.10E-179 dispersed
Tan08g0912 Tan-Chr8:12853855 Tan11g2197 Tan-Chr11:59274760 2.50E-17 dispersed
Tan08g0912 Tan-Chr8:12853855 Tan03g2736 Tan-Chr3:80297074 4.80E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28130 PF02309 AUX_IAA 2.40E-07 CL0072 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g0912 - - - 0.0