Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00003 ATGGAACGTGGATCTAGTAGCAGCGGGAGCTCTTTTGTTGTAGGGTTTGGAGAAAACAGTTGCAGCACCGGGGGTGGGCTTTGTTCGATGGGGGCAGTGATGATGGCTCCGCCGATGAATAATTGCGGTGCAGAAATGGATCATAAGCTGTTTTTTCCTTTAGTCTGGAACAACTCTTCCGCTAATAGCTCTAATGGCGGCCAAAGGGTGACTACTTTATTTCCTCAAGATCGTAATCAAGGAGTTTCTTCTCTCATGGAGGTTAACGACGCTGACTGTCAAAACAACCCTTCCAACGGCTGTTATTTGAGAGCTAAGATTATGGGTCACCCTCTTTTTTCGAGACTCTTGAACTCATATGTCAACTGTCAGAAGGTTGGGGCTCCGCCTGAAGTGCTGGCTGGGTTAGAGGAGGTCTGTGCTTCATACAATGCTACATCGGCTGGGGGCGATGGAAGGCCGTCGGAGACTGCAAGCTGTGTAGGAGAAGACCCTGCATTGGACCAGTTTATGGAAGCTTACTGTGAGATGCTGGCTAAATATGAGCAAGAGCTCACTAAACCCTTCAAAGAAGCCATGCTTTTCTTCTCTAGAATTGAGTCTCAACTGAAGGCCTTGGAAGTTTCTTCCGGTGACTTTCCCATTCCTAATCTCTTTAGCTCCATAACGTTTGGAACTTCCAAGGAAGAAGAGGTTCATGTCGAAGACAATTATATTGATCCCGAAGCTGAGGATAAAGATCTCAAACTTCAGCTTTTACGCAAGTACAGCGGATGTCTCGGCAGTCTTAAGAAAGAATTTCTGAAGAAGAAGAAGAATGGCAAGTTGCCGAAGGAAGCCCGGCAAAAACTGCTAGACTGGTGGACTAAACATTACAAATGGCCTTACCCCTCGGAGGGGCAGAAGGTGGCATTGTCGAATTCAACTGGTCTCGATCTGAAGCAGATCAACAACTGGTTTATAAACCAAAGGAAGCGCCATTGGAGGCCGTCTGATGATATGCAATTTGTGGTGATGGACGGTGATCATCCCCCCCATTTCTACATGGATAGTATCATCTCCAATCCTTTCGCACTCGACTGCCCGTCGTCTCTTCTTTGA 1101 46.96 MERGSSSSGSSFVVGFGENSCSTGGGLCSMGAVMMAPPMNNCGAEMDHKLFFPLVWNNSSANSSNGGQRVTTLFPQDRNQGVSSLMEVNDADCQNNPSNGCYLRAKIMGHPLFSRLLNSYVNCQKVGAPPEVLAGLEEVCASYNATSAGGDGRPSETASCVGEDPALDQFMEAYCEMLAKYEQELTKPFKEAMLFFSRIESQLKALEVSSGDFPIPNLFSSITFGTSKEEEVHVEDNYIDPEAEDKDLKLQLLRKYSGCLGSLKKEFLKKKKNGKLPKEARQKLLDWWTKHYKWPYPSEGQKVALSNSTGLDLKQINNWFINQRKRHWRPSDDMQFVVMDGDHPPHFYMDSIISNPFALDCPSSLL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 279462 281707 - Bda001658.1 Bda01g00003 3
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00003 366 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Bda01g00003 366 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 356 - -
Bda01g00003 366 CDD homeodomain 279 331 IPR001356 GO:0003677
Bda01g00003 366 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 356 - -
Bda01g00003 366 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Bda01g00003 366 SMART ELK_2 247 268 IPR005539 GO:0003677
Bda01g00003 366 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Bda01g00003 366 ProSiteProfiles ELK domain profile. 247 267 IPR005539 GO:0003677
Bda01g00003 366 SMART HOX_1 269 334 IPR001356 GO:0003677
Bda01g00003 366 Pfam KNOX1 domain 103 141 IPR005540 GO:0003677|GO:0005634
Bda01g00003 366 Gene3D - 272 334 - -
Bda01g00003 366 ProSitePatterns 'Homeobox' domain signature. 305 328 IPR017970 GO:0000981|GO:0006355
Bda01g00003 366 SUPERFAMILY Homeodomain-like 269 346 IPR009057 -
Bda01g00003 366 Pfam ELK domain 247 268 IPR005539 GO:0003677
Bda01g00003 366 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Bda01g00003 366 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00003 Bda-Chr1:279462 Bda14g00697 Bda-Chr14:5191751 0 dispersed
Bda01g00003 Bda-Chr1:279462 Bda09g01593 Bda-Chr9:47367375 6.02E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15321 PF03791 KNOX2 7.00E-22 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00003 - - zju:107417102 374.4