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Transposable elements (TEs)
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N6-methyladenosine (m6A)
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Genome annotation
iTAK
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Interproscan
Dupgen-finder
Genome homology search
Blast
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Diamond
SequenceServer
Sequence fetch
Synteny analysis
MCScanX
ColinearScan
Synvisio
Syn-blocks-stat
Nucleotide mutation rate calculation
ParaAT
KaKs
_Calculator
NG_KaKs_Cal
Syn_Ks_Dis
Homologous dotplot drawing
B_Dotter
BB_Dotter
BBK_Dotter
Subgenome fractionation comparlson
Paleo-gene_identifer
Paleo-gene_Rl
Paleo-gene_Rll
P-index-calculator
Syn-deco
Multi-syn-phytre
Gene structure and evolution
Sequence Alignment
IQ-Tree
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Phyml
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Cpgfinder
Codonw
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ShinyCircos
SS-extractor
SAF-converter
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BDI-deduplicator
BDI-extractor
BDI-combiner
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
Local_run
Bio-software
Statistics
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Biological annotations
Gene duplication type
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Genome annotation
iTAK
sequence alignment and best match
Jbrowse
Sequence alignment between arbitrary species
Interproscan
Sequence alignment between arbitrary species
Dupgen finder
sequence alignment and best match
Dupgen finder
The Dupgen finder software is invoked to analyze the type of gene replication.
Model selection
general
strict
Please provide a valid state.
Target species gene position file
Example
File not uploaded
Blast output file
Example
File not uploaded
Target and outgroup gff file
Example
File not uploaded
Target and outgroup Blast file
Example
File not uploaded
Target species name
Valid first name is required.
Outgroup species name
Valid last name is required.
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Species
Begonia darthvaderiana
Benincasa hispida
Begonia loranthoides
Begonia masoniana
Begonia peltatifolia
Citrullus amarus
Cucurbita argyrosperma
Citrullus colocynthis
Citrullus ecirrhosus
Cucumis hystrix
Citrullus lanatus
Citrullus lanatus cultivar
Cucurbita maxima
Cucumis melo
Cucumis metuliferus
Cucurbita moschata
Citrullus mucsospermus
Coriaria nepalensis
Cucurbita pepo
Citrullus rehmii
Cucumis sativus
Hemsleya chinensis
Herpetospermum pedunculosum
Luffa acutangula
Luffa cylindrica
Lagenaria siceraria
Momordica charantia
Sechium edule
Trichosanthes anguina
Vitis vinifera
Gene ID
Example
Or, Query Sequence
Example