List of tools
Selected Analysis Tools
|
Tools |
Description |
|
Tools packaging in the platform |
|
|
Sequence alignment between arbitrary species |
|
|
Quickly search for homologous sequences |
|
|
Cucurbitales sequence alignment and Matching visualization |
|
|
Syntenic matching tool |
|
|
Syntenic matching tool |
|
|
Cucurbitales syntenic visualization |
|
|
Fast kaks batch operation |
|
|
KaKs_Calculator is a nucleotide mutation rate calculator. |
|
|
NG_KaKs_Cal is a newly developed NG-86 core algorithm tool. |
|
|
Syn_Ks_Dis is a synonymous substitution rate (Ks) distribution statistician tool. |
|
|
Plotting blastp dotplot diagrams |
|
|
Drawing block dotplot function |
|
|
Plotting Ks dotplot diagrams |
|
|
Extract the collinearity homologous region to make a collinearity list |
|
|
Compare the level of gene loss for the reference species |
|
|
Compare the level of gene retention for the reference species |
|
|
P-index is a statistical approach for quantifying fluctuations in gene retention differences |
|
|
Based on Hidden Markov Model |
|
|
ldentification of gene structural domains |
|
|
Motif Analysis |
|
|
Analysis of potential regions of CpG islands |
|
|
Codon preference analysis |
|
|
Gene structure mapping |
|
|
Multiple sequence alignment |
|
|
Construct phylogenetic tree |
|
|
Rapid construction of phylogenetic trees |
|
|
Building evolutionary trees |
|
|
ShinyCircos |
|
|
SS-extractor is a gene sequence extraction tool. |
|
|
SAF-converter is a file format conversion tool. |
|
|
BDI-deduplicator is a tool for removing redundant duplicate data. |
|
|
BDI-combiner is a file merging tool. |
|
|
BDI-finder is a search and replace tool. |
|
|
BDI-extractor is a tool for extracting data by column. |
|
|
Classification and identification of genomic gene replication |