Submit

  1. Welcome to submit plant data to the CGBP
  2. Data already submitted
  3. CGBP Data Policy
  4. CGBP Publication Policy

Welcome to submit plant data to the CGBP

If you have a new set of genomic data in a plant and would like to submit them to CGBP. Please email your genomic data to [email protected] or [email protected] and include the following information.

Data already submitted

Species_name Abbr chr_number Genes_number GFF3 CDS PEP
Hemsleya chinensis Hch 14 29,050 Hch.filter.gff3 Hch.filter.cds.fa Hch.filter.protein.fa

* There are restrictions on the use of this form. Please be sure to read and follow the usage policies outlined in the website on this page.

For more CGRP related genomic data please see Genome.

CGBP Data Policy

The data produced and published by CGBP is governed by the following data policy. Our mission is to support open data and information sharing. We also recognize the need for limited and time-sensitive protection of certain types of data to support the use of such data by those who generate it.

For sequencing projects: Data are subject to a one-year embargo. For each data or analytical product (raw or processed), the embargo begins upon completion of the standard deliverables as described in the catalog. At the end of the embargo period, the data will be publicly available on the relevant CGBP portal and will not be subject to use restrictions.

CGBP Publication Policy

CGBP is keen to see the data generated by the facility lead to scientific publications. CGBP users and collaborators have the right to produce publication manuscripts and the responsibility to lead this effort, and CGBP would like to receive confirmation (see sponsorship statement below) of the sequence data generated as well as any other contributions such as assembly, analysis, annotation, validation, creation of genome browsers, etc.

Users, collaborators, and CGBP are jointly committed to publishing the first analysis of data generated by this facility, provided it is done in a timely manner. Publications resulting from these efforts should specify the collaborative nature of the project, and it is expected that authorship should include all those who have contributed significantly to the work.

CGBP has extensive experience and capabilities in the analysis, annotation, comparative analysis and interpretation of sequence and functional genomics data types, as well as advanced assembly and engineering strategies for DNA synthesis applications. If CGBP personnel have made significant contributions to data generation and analysis or DNA synthesis and engineering efforts in a manner that goes beyond the deliverables of CGBP standard products and/or have made substantial intellectual contributions to the production of the manuscript, it is best practice to include these individuals as authors of the publication. Attribution arrangements should reflect the respective contributions of collaborators and users. For example, if JGI staff played a lead role in the analysis, planning, writing, and editing of the manuscript under an agreement with the collaborator, it is desirable that these individuals appear as first and/or senior authors of the paper.

  1. Current scientific name (required) and Common name (optional)
  2. Genome size (required)
  3. Contig N50 (required)
  4. Genes (required)
  5. Genomic sequence, (FASTA) (required)
  6. Annotated features (GTF) (optional)
  7. Annotated features (GFF3) (optional)
  8. Sequence and annotation (GBFF) (optional)
  9. Sequence and annotation (GBFF) (optional)
  10. Transcripts (FASTA) (optional)
  11. Genomic CDS (FASTA) (optional)
  12. Proteins (FASTA) (optional)

New genomic data will be named after the manuscript is accepted. For more information, please see the literature page or contact [email protected] or [email protected]. All submissions will be greatly appreciated!