Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000000 897 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 897 0 0 0 0 0 0 0 0 0
OG0000001 703 0 3 0 0 0 3 0 8 5 2 9 9 1 1 4 0 7 2 0 12 2 1 222 317 34 0 15 8 38
OG0000002 683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 681 0 0 0 0
OG0000003 678 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 637 28 0 5 0 6
OG0000004 581 7 11 6 4 8 34 3 30 34 20 28 17 10 18 27 9 2 5 5 37 22 35 33 33 18 23 31 39 32
OG0000005 569 0 20 0 0 0 4 0 6 10 14 44 6 0 55 228 0 6 0 0 15 6 5 25 33 29 2 12 12 35
OG0000006 560 8 74 11 21 12 8 2 22 24 4 28 11 23 3 52 67 9 1 0 16 5 100 1 30 0 2 3 15 7
OG0000007 556 0 1 0 0 0 9 0 5 14 0 7 8 0 1 3 0 15 1 0 10 0 0 26 376 57 0 11 3 9
OG0000008 546 13 22 15 18 6 19 5 6 20 22 12 19 19 19 23 18 19 12 0 19 18 13 23 33 34 24 43 20 21
OG0000009 540 47 192 0 51 9 23 0 18 26 0 3 20 0 1 43 4 21 1 0 27 2 15 1 25 1 0 1 3 6
   
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