Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform

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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000010 522 0 0 0 0 0 378 0 4 0 0 0 140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
OG0000011 502 2 3 2 1 2 54 3 50 31 17 21 56 10 19 22 9 48 1 8 63 7 8 7 4 10 20 3 7 10
OG0000012 495 104 70 1 29 10 1 0 4 1 1 6 3 6 2 91 12 3 0 0 7 0 4 1 31 2 1 2 11 92
OG0000013 494 13 15 12 14 11 15 17 15 13 14 14 15 23 14 16 19 15 34 6 15 14 14 15 20 18 14 13 15 21
OG0000014 494 8 19 13 8 6 19 15 18 17 19 16 19 14 17 20 19 19 9 12 20 19 25 15 15 13 21 12 25 19
OG0000015 487 3 19 8 13 7 16 3 17 13 17 12 16 9 15 24 13 17 9 8 14 16 7 12 30 20 24 15 38 44
OG0000016 485 174 4 6 134 55 2 0 0 2 0 4 0 9 2 14 11 1 0 0 3 1 15 25 13 2 0 3 2 3
OG0000017 485 0 0 0 0 0 9 0 139 3 16 29 63 0 52 109 0 1 0 0 6 2 2 1 29 5 0 5 9 5
OG0000018 468 15 22 15 12 7 19 2 19 21 14 15 19 14 11 27 20 19 14 2 23 12 9 9 19 8 19 18 20 19
OG0000019 462 27 93 1 36 9 4 3 15 6 6 7 10 33 1 1 40 6 17 1 7 25 8 7 57 0 1 25 10 3
   
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