Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.
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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000020 449 72 90 7 141 47 5 0 5 7 0 7 4 3 0 14 9 2 2 0 6 0 5 4 11 0 0 0 5 3
OG0000021 444 5 17 7 7 3 19 0 19 18 19 14 17 15 14 16 23 17 23 4 18 18 10 11 17 20 23 15 19 18
OG0000022 428 15 13 14 13 12 13 18 14 13 15 13 13 19 14 14 21 13 19 6 12 15 14 13 14 13 14 12 21 15
OG0000023 427 5 33 5 6 5 6 2 7 11 9 7 9 14 15 19 14 9 9 8 9 17 18 14 32 37 9 16 34 32
OG0000024 420 10 17 6 10 10 12 10 11 13 12 12 12 20 14 13 19 13 19 19 12 14 12 15 15 15 13 15 22 23
OG0000025 420 5 7 3 7 6 20 1 13 18 19 21 20 22 27 11 26 15 13 2 21 14 8 3 7 29 19 15 19 15
OG0000026 396 1 26 0 1 0 19 0 18 23 1 8 18 0 3 202 1 22 0 0 26 8 1 0 4 5 0 5 0 4
OG0000027 396 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 394 0 0 0 0
OG0000028 394 0 0 0 0 0 1 0 0 10 0 11 0 0 1 0 0 0 0 0 0 0 0 1 303 60 0 1 1 5
OG0000029 393 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 382 0 0 0 6
   
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