Orthologous Gene Search

  Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.

  Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 51e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Orthogroup analysis platform

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Select Orthogroup Total Tree Image Download Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa Hepe Lac Lcy Lsi Mch Sed Tan Vvi
OG0000030 387 8 18 7 6 7 16 1 19 10 18 10 16 10 15 19 12 16 20 2 15 14 15 11 19 8 17 19 19 15
OG0000031 385 6 21 9 5 5 15 2 12 14 9 17 13 15 14 19 22 15 7 0 15 12 15 15 13 23 20 13 17 21
OG0000032 383 0 0 0 0 0 0 0 0 0 3 0 0 0 3 372 0 0 0 0 0 5 0 0 0 0 0 0 0 0
OG0000033 380 0 0 0 0 0 0 0 0 0 2 0 0 0 9 367 0 0 0 0 0 2 0 0 0 0 0 0 0 0
OG0000034 376 2 16 6 1 1 12 17 9 11 12 11 13 16 12 12 16 11 25 14 12 12 11 10 1 10 10 11 41 30
OG0000035 376 14 6 8 10 4 9 1 10 10 12 7 11 14 12 18 11 8 8 4 9 11 10 7 17 20 21 5 29 24
OG0000036 376 8 18 12 11 10 9 14 9 10 10 10 9 17 12 12 18 9 21 5 10 11 12 13 11 12 13 11 22 24
OG0000037 376 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 13 296 7 1 8 35 12
OG0000038 375 2 19 0 0 0 9 0 2 4 0 49 8 0 3 38 0 0 0 0 9 7 1 47 135 6 0 3 16 17
OG0000039 364 13 15 12 10 13 10 18 11 11 7 11 10 18 11 11 17 10 23 19 11 11 11 9 11 10 10 10 18 10
   
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