Overview

Welcome to CGRP

We developed the Cucurbitales Genomics Research Platform (CGRP), which currently contains 185 genomes covering 34 Cucurbitales and Hemsleya chinensis. The platform contained functional annotations for 8,204,891 protein-coding genes, KEGG pathway annotations for 700,237 genes, and identified 18,367,314 TEs, 82,308 RPs, and 886,574 GDTs. Through a series of comparative genomics methods, we provide functions such as synteny analysis, and identification of paralogs, orthologs, and trait genes. At the same time, the platform has developed a variety of visualization tools including DotView, SynView, DecoBrowse and AncVisual. The integrated resources include the species encyclopedia, omics data, and the Comparative Genomics Toolbox, which contains 49 tools, 14 of which are newly developed. The platform also provides intuitive query, analysis and visualization tools, supports statistical charts, user manuals and submission portals, ensuring that it is accessible to all users, making it an important platform for Cucurbitales plant genomics research.


Portals of data


213

Genome

8,204,891

Fun-Annotation

700,237

KEGG Annotation

18,367,314

TEs

82,308

RPs

886,574

GDTs

1,127,813

Syn-Blocks

2,700

Syn-Dotplots

225×23647

Deco-alignment

270,489

WGDs-Genes

9

Anc-Genomes

6

Anc-Aligning

252,704

Syn orthogroups

501,617

Gene families

7,109

Transcriptome

5,751

Metabolome

19,631

literature

53

External database

Genomes (185)

Species Name Family Assembly level GenBank Chr num links Journal Reference
Cucumis sativus Cucumis L. Chromosome GCF_000004075.3 7 Gigascience (Li, et al. 2019)
Cucumis melo Cucumis L. Chromosome GCA_025177605.1 12 Nature Communications (Vaughn, et al. 2022)
Cucurbita pepo subsp. pepo Cucurbita L. Chromosome GCF_002806865.2 20 Plant Biotechnology Journal (Montero-Pau, et al. 2017)
Gynostemma pentaphyllum Gynostemma L. Chromosome GCA_028015215.1 11 Horticulture Research (Zhang, et al. 2023)
Luffa aegyptiaca Luffa L. Chromosome GCA_017139565.1 13 Horticulture Research (Wu, et al. 2020)
Lagenaria siceraria Lagenaria L. Chromosome GCA_002890555.2 11 Plants Basel (Mastrochirico, et al. 2023)
Benincasa hispida Benincasa L. Chromosome GCA_009727055.1 12 Nature Communications (Xie, et al. 2019)
Citrullus lanatus Citrullus L. Chromosome GCA_039639715.1 11 - -
Citrullus colocynthis Citrullus L. Chromosome GCA_039645085.1 11 - -
Herpetospermum pedunculosum Herpetospermum L. Chromosome GCA_028017165.1 10 Genome Biology and Evolution (Yang, et al. 2023)
Cucurbita argyrosperma subsp. sororia Cucurbita L. Chromosome GCA_018691285.1 20 Horticulture Research (Barrera-Redondo, et al. 2021)
Begonia masoniana Begonia L. Chromosome GCA_022432975.1 15 New Phytologist (Li, et al. 2022)
Begonia loranthoides Begonia L. Chromosome GCA_022433065.1 19 New Phytologist (Li, et al. 2022)
Begonia peltatifolia Begonia L. Chromosome GCA_022433055.1 15 New Phytologist (Li, et al. 2022)
Momordica charantia Momordica L. Scaffold GCA_001995035.1 - - -
Momordica charantia Momordica L. Scaffold GCF_001995035.1 - - -
Cucurbita moschata Cucurbita L. Scaffold GCA_002738365.1 - Molecular Plant (Sun, et al. 2017)
Cucurbita moschata Cucurbita L. Scaffold GCF_002738365.1 - Molecular Plant (Sun, et al. 2017)
Cucurbita maxima Cucurbita L. Scaffold GCA_002738345.1 - Molecular Plant (Sun, et al. 2017)
Cucurbita maxima Cucurbita L. Scaffold GCF_002738345.1 - Molecular Plant (Sun, et al. 2017)
Trichosanthes truncata Trichosanthes L. Scaffold GCA_033996785.1 - - -
Datisca glomerata Datisca L. Scaffold GCA_003255025.1 - Science (Griesmann, et al. 2018)
Telfairia occidentalis Telfairia L. Scaffold GCA_026257165.2 - Biodivers Genomes (Pirro, et al. 2022)
Begonia fuchsioides Begonia L. Scaffold GCA_003255005.1 - Science (Griesmann, et al. 2018)
Citrullus amarus Citrullus L. Chromosome GCA_039644775.1 11 - -
Citrullus rehmii Citrullus L. Chromosome GCA_039644925.1 11 - -
Citrullus lanatus subsp. mucosospermus Citrullus L. Chromosome GCA_039644915.1 11 - -
Citrullus naudinianus Citrullus L. Chromosome GCA_039645035.1 11 - -
Citrullus ecirrhosus Citrullus L. Chromosome GCA_039644935.1 11 - -
Coriaria nepalensis Coriaria L. Chromosome GCA_027186245.1 20 - -
Sicyos edulis Sicyos L. Chromosome GCA_036507275.1 14 - -
Luffa acutangula Luffa L. Chromosome GCA_036850905.1 13 - -
Cucurbita ficifolia Cucurbita L. Chromosome GCA_033971965.1 20 - -
Cucumis hystrix Cucumis L. Chromosome GCA_025688845.1 14 - -
Trichosanthes cucumerina Trichosanthes L. Chromosome GCA_036507285.1 11 - -
Cucumis cinereus Cucumis L. Scaffold GCA_037974625.1 - - -
Sechiopsis laciniata Sechiopsis L. Scaffold GCA_037833695.1 - - -
Cyclanthera cordifolia Cyclanthera L. Scaffold GCA_037832605.1 - - -
Sicyos baderoa Sicyos L. Scaffold GCA_037832685.1 - - -
Cucumis variabilis Cucumis L. Scaffold GCA_037974545.1 - - -
Gerrardanthus grandiflorus Gerrardanthus L. Scaffold GCA_040966115.1 - - -
Gurania insolita Gurania L. Scaffold GCA_040966235.1 - - -
Frantzia villosa Frantzia L. Scaffold GCA_040966175.1 - - -
Gurania lobata Gurania L. Scaffold GCA_040966215.1 - - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039619345.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039645055.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039637665.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039637515.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039638265.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039638695.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039639425.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039638095.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039637945.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039639725.1 11 - -
Citrullus lanatus Citrullus L. Complete Genome GCA_039637835.1 11 - -
Citrullus colocynthis Citrullus L. Complete Genome GCA_039644965.1 11 - -
Citrullus colocynthis Citrullus L. Complete Genome GCA_039644945.1 11 - -
Citrullus colocynthis Citrullus L. Complete Genome GCA_039645205.1 11 - -
Citrullus amarus Citrullus L. Complete Genome GCA_039644905.1 11 - -
Citrullus amarus Citrullus L. Complete Genome GCA_039644995.1 11 - -
Citrullus amarus Citrullus L. Complete Genome GCA_039644975.1 11 - -
Citrullus amarus Citrullus L. Complete Genome GCA_039645015.1 11 - -
Citrullus lanatus subsp. mucosospermus Citrullus L. Complete Genome GCA_039644955.1 11 - -
Coriaria nepalensis Coriaria L. Chromosome GCA_027190085.1 20 - -
Cucumis sativus Cucumis L. Chromosome GCA_016163735.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161785.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161805.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161715.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161855.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161875.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161885.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161765.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016163705.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016163745.1 7 Nature Communications (Li, et al. 2022)
Cucumis sativus Cucumis L. Chromosome GCA_016161775.1 7 Nature Communications (Li, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261895.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_040436765.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262045.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262125.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262055.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261985.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262315.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262265.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262095.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_020920065.2 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_025177625.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262135.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261935.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261875.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_011762645.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262325.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262305.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261825.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261845.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026261915.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262175.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262215.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262015.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262255.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262345.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262025.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_020920055.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo Cucumis L. Chromosome GCA_026262165.1 12 Plant Journal (Oren, et al. 2022)
Cucumis melo subsp. agrestis Cucumis L. Chromosome GCA_030578075.1 12 - -
Cucumis melo subsp. agrestis Cucumis L. Chromosome GCA_014525375.1 12 iScience (Yang, et al. 2020)
Cucumis melo var. inodorus Cucumis L. Chromosome GCA_009760825.1 12 iScience (Zhang, et al. 2020)
Citrullus lanatus Citrullus L. Chromosome GCA_029034555.1 11 Frontiers in Plant Science (Nie, et al. 2023)
Citrullus lanatus Citrullus L. Chromosome GCA_029034585.1 11 Frontiers in Plant Science (Nie, et al. 2023)
Citrullus lanatus Citrullus L. Chromosome GCA_000238415.2 12 Frontiers in Plant Science (Nie, et al. 2023)
Citrullus lanatus Citrullus L. Chromosome GCA_004801215.2 11 Frontiers in Plant Science (Nie, et al. 2023)
Citrullus lanatus subsp. cordophanus Citrullus L. Chromosome GCA_018142915.1 11 PNAS (Renner, et al. 2021)
Cucurbita pepo subsp. pepo Cucurbita L. Chromosome GCA_002806865.2 20 Plant Biotechnology Journal (Montero-Pau, et al. 2017)
Gynostemma pentaphyllum Gynostemma L. Chromosome GCA_020536105.1 11 DNA Research (Huang, et al. 2021)
Cucumis melo Cucumis L. Scaffold GCA_902497455.1 - Frontiers in Plant Science (Castanera, et al. 2020)
Cucumis sativus Cucumis L. Scaffold GCA_000224045.1 - Public Library of Science ONE (Wóycicki, et al. 2011)
Benincasa hispida Benincasa L. Chromosome GCA_027475165.1 12 - -
Citrullus colocynthis Citrullus L. Chromosome GCA_963978565.1 11 - -
Citrullus amarus Citrullus L. Chromosome GCA_033088355.1 11 - -
Citrullus amarus Citrullus L. Chromosome GCA_033088365.1 11 - -
Luffa acutangula Luffa L. Chromosome GCA_012295215.1 13 Scientific Reports (Saensuk, et al. 2022)
Citrullus amarus Citrullus L. Chromosome GCA_030954535.1 11 - -
Citrullus lanatus subsp. mucosospermus Citrullus L. Chromosome GCA_030954485.1 11 - -
Cucurbita argyrosperma subsp. argyrosperma Cucurbita L. Chromosome GCA_004115005.2 20 Molecular Plant (Barrera-Redondo, et al. 2019)
Momordica charantia Momordica L. Scaffold GCA_013281855.1 11 PNAS (Matsumura, et al. 2020)
Lagenaria siceraria Lagenaria L. Scaffold GCA_003268545.1 11 Plant Journal (Wu, et al. 2017)
Cucumis sativus Cucumis L. Contig GCA_001483825.3 - - -
Cucumis melo Cucumis L. Scaffold GCA_902497455.1 - Frontiers in Plant Science (Castanera, et al. 2020)
Cucumis melo var. makuwa Cucumis L. Scaffold GCA_005549215.1 - - -
Cucumis melo var. makuwa Cucumis L. Scaffold GCA_005549225.1 - Scientific Data (Shin, et al. 2019)
Momordica charantia Momordica L. Scaffold GCA_900491585.1 - - -
Luffa aegyptiaca Luffa L. Scaffold GCA_016170045.1 - - -
Luffa aegyptiaca Luffa L. Contig GCA_012295205.1 - - -
Benincasa hispida Benincasa L. Scaffold GCA_947786645.1 - - -
Benincasa hispida Benincasa L. Scaffold GCA_016987355.1 - - -
Benincasa hispida Benincasa L. Scaffold GCA_012071895.1 - - -
Lagenaria siceraria Lagenaria L. Scaffold GCA_000466325.1 - Plant Journal (Xu, et al. 2013)
Citrullus colocynthis Citrullus L. Scaffold GCA_031780015.1 - - -
Cucumis melo Cucumis L. Chromosome GCA_036687305.1 12 - -
Begonia darthvaderiana Begonia L. Chromosome GCA_022432945.1 15 New Phytologist (Li, et al. 2022)
Cucumis sativus Cucumis L. Scaffold GCA_000224045.1 - Public Library of Science ONE (Wóycicki, et al. 2011)
Cucumis sativus Cucumis L. Scaffold GCF_000224045.1 - Public Library of Science ONE (Wóycicki, et al. 2011)
Cucumis melo Cucumis L. Scaffold GCA_000313045.1 - PNAS (Garcia-Mas, et al. 2012)
Cucumis melo Cucumis L. Scaffold GCF_000313045.1 - PNAS (Garcia-Mas, et al. 2012)
Cucumis sativus L. var. sativus Cucumis L. Chromosome - 7 GigaScience (Li, et al. 2019)
Cucumis sativus L. var. sativus Cucumis L. Chromosome - 7 - -
Cucumis sativus L. var. sativus Cucumis L. Chromosome - 7 Molecular Genetics and Genomics (Osipowski, et al. 2020)
Cucumis sativus var. hardwickii Cucumis L. Chromosome - 7 Nature Genetics (Qi, et al. 2013)
Cucumis hystrix Cucumis L. Chromosome - 7 Horticulture Research (Qin, et al. 2021)
Citrullus lanatus subsp. vulgaris Citrullus L. Chromosome - 11 Nature Genetics (Guo, et al. 2019)
Citrullus lanatus subsp. Vulgaris Citrullus L. Chromosome - 11 Plant Biotechnology Journal (Wu, et al. 2019)
Citrullus lanatus subsp. Cordophanus Citrullus L. Chromosome - 11 Proc Natl Acad Sci USA (Renner, et al. 2021)
Citrullus mucosospermus Citrullus L. Chromosome - 11 Plant Biotechnology Journal (Wu, et al. 2023)
Citrullus amarus Citrullus L. Chromosome - - Plant Biotechnology Journal (Wu, et al. 2023)
Citrullus colocynthis Citrullus L. Chromosome - 11 Plant Biotechnology Journal (Wu, et al. 2023)
Cucumis melo Cucumis L. Chromosome - 12 Frontier in Plant Science (Castanera, et al. 2021)
C. melo var. cantalupensis Cucumis L. Chromosome - - iScience (Pichot, et al. 2022)
Cucumis melo L. var. inodorus Cucumis L. Chromosome - 12 iScience (Zhang, et al. 2019)
C. melo L. ssp. agrestis Cucumis L. Chromosome - 12 Plant Journal (Ling, et al. 2021)
C. melo var. reticulatus Cucumis L. Chromosome - 12 Communications Biology (Yano, et al. 2020)
Cucumis metuliferus Cucumis L. Chromosome - 12 Plant Journal (Ling, et al. 2021)
Cucurbita maxima Cucurbita L. Chromosome - 20 Molecular Plant (Sun, et al. 2017)
Cucurbita moschata Cucurbita L. Chromosome - 20 Molecular Plant (Sun, et al. 2017)
Cucurbita pepo subsp. pepo Cucurbita L. Chromosome - 20 Plant Biotechnology Journal (Montero-Pau, et al. 2018)
Cucurbita argyrosperma subsp. argyrosperma Cucurbita L. Chromosome - 20 Horticulture Research (Barrera-Redondo, et al. 2021)
Cucurbita argyrosperma subsp. sororia Cucurbita L. Chromosome - 20 Horticulture Research (Barrera-Redondo, et al. 2021)
Momordica charantia Momordica L. Chromosome - 11 Proc Natl Acad Sci USA (Matsumura, et al. 2020)
Momordica charantia Momordica L. Chromosome - 11 Horticulture Research (Cui, et al. 2020)
Momordica charantia Momordica L. Chromosome - 11 Horticulture Research (Cui, et al. 2020)
Lagenaria siceraria Lagenaria L. Chromosome - 11 Plant Journal (Wu, et al. 2017)
Luffa cylindrica Luffa L. Chromosome - 13 Molecular Ecology Resources (Zhang, et al. 2019)
Luffa cylindrica Luffa L. Chromosome - 13 Horticulture Research (Wu, et al. 2020)
Luffa acutangula Luffa L. Chromosome - 13 Molecular Ecology Resources (Pootakham, et al. 2020)
Benincasa hispida Benincasa L. Chromosome - 12 Nature Communications (Xie, et al. 2019)
Sechium edule Sechium L. Chromosome - 14 Horticulture Research (Fu, et al. 2021)
Siraitia grosvenorii Siraitia L. Chromosome - - GigaScience (Xia, et al. 2018)
Trichosanthes anguina Trichosanthes L. Chromosome - 11 Horticulture Research (Ma, et al. 2020)
Begonia darthvaderiana Begonia L. Chromosome - 15 New Phytologist (Li, et al. 2022)
Begonia loranthoides Begonia L. Chromosome - 19 New Phytologist (Li, et al. 2022)
Begonia masoniana Begonia L. Chromosome - 15 New Phytologist (Li, et al. 2022)
Begonia peltatifolia Begonia L. Chromosome - 15 New Phytologist (Li, et al. 2022)
Begonia fuchsioides Begonia L. Scaffold - - New Phytologist (Li, et al. 2022)
Begonia masoniana Begonia L. Chromosome - 15 New Phytologist (Li, et al. 2022)
Datisca glomerata Datisca L. Chromosome - - Science (Griesmann, et al. 2018)
Coriaria nepalensis Coriaria L. Chromosome - 20 - -
Coriaria nepalensis Coriaria L. Chromosome - 20 - -
Amborella trichopoda Amborella AWHE01 GCA_000471905.1 706.3 Scaffold -
Nymphaea thermarum Nymphaea JAANDH01 GCA_011799765.1 368 Scaffold -
Brasenia schreberi Brasenia JARYZE01 GCA_030142015.1 1,171 Chromosome -
Aristolochia contorta Aristolochia JAHZSQ01 GCA_022405105.1 210.5 Chromosome -
Annona cherimola Annona JASFXW01 GCA_030490835.1 794 Chromosome
Annona cherimola Annona JANVAV01 GCA_035061585.1 1,137 Chromosome
Magnolia officinalis Magnolia JAJHSJ01 GCA_021015155.1 1,685 Scaffold
Chimonanthus salicifolius Chimonanthus JAAGOE01 GCA_013350335.1 853.4 Chromosome
Acorus gramineus Acorus JAUJYN01 GCA_030737835.1 398.6 Chromosome
Wolffia australiana Wolffia --- GCA_029677425.1 358.8 Chromosome
Dioscorea cayenensis Dioscorea BLBR01 GCA_009730915.2 584.2 Chromosome
Apostasia shenzhenica Apostasia PEFY01 GCA_002786265.1 348.7 Scaffold
Cymbidium sinense Cymbidium JAKCPB01 GCA_021442155.1 3,526 Chromosome
Vanilla planifolia Vanilla JAIUJO01 GCA_023846275.1 1,416 Chromosome
Asparagus setaceus Asparagus WHSE01 GCA_012295165.1 710.2 Chromosome
Scilla litardierei Scilla JAULAV01 GCA_030789695.1 3,697 Chromosome
Hemerocallis citrina Hemerocallis JACEHZ01 GCA_017893485.1 3,776 Chromosome
Allium cepa Allium JASFAV01 GCA_030765085.1 15,932 Chromosome
Avena atlantica Avena CAJUWN01 GCA_910589765.1 3,685 Chromosome
Avena sativa Avena --- GCA_916181665.1 10,841 Chromosome
Triticum turgidum Triticum --- GCA_900231445.1 9,964 Chromosome
Panicum virgatum Panicum JABWAI01 GCA_016808335.1 1,130 Chromosome
Setaria italica Setaria AGNK02 GCA_000263155.2 405.7 Chromosome
Raddia distichophylla Raddia SPJY01 GCA_005191435.1 580.8 Scaffold
Cynodon dactylon Cynodon VWOH01 GCA_009268075.1 0.4839 Scaffold
Oryza sativa Oryza --- GCA_001433935.1 373.8 Chromosome
Carex kokanica Carex JAJGRX01 GCA_025461125.1 673.4 Contig
Juncus inflexus Juncus JAJHPC01 GCA_024447665.1 267.6 Scaffold
Ananas comosus Ananas LODP01 GCA_001540865.1 381.9 Chromosome
Cocos nucifera Cocos QRFJ01 GCA_006176705.1 2,102 Scaffold
Calamus simplicifolius Calamus UESW01 GCA_900491605.1 1,961 Scaffold
Musa acuminata Musa CAIC01 GCA_000313855.2 472.2 Chromosome
Thalia dealbata Thalia JARKGZ01 GCA_030544415.1 255 Chromosome
Costus lasius Costus JANVAS01 GCA_027563935.1 1,281 Chromosome
Alpinia oxyphylla Alpinia --- GCA_013088065.1 0.008213 Complete
Boesenbergia rotunda Boesenbergia JAGFNQ01 GCA_024364735.1 2,348 Scaffold
Aquilegia coerulea Aquilegia NXFA01 GCA_002738505.1 302.0 Scaffold
Coptis chinensis Coptis JADFTS01 GCA_015680905.1 935.7 Chromosome
Akebia trifoliata Akebia JADQWC01 GCA_017979445.1 652.8 Chromosome
Papaver somniferum Papaver PUWZ01 GCA_003573695.1 2,715 Chromosome
Amaranthus cruentus Amaranthus JAGPNP01 GCA_019425755.1 370.9 Chromosome
Chenopodium berlandieri Chenopodium JAWIZW01 GCA_034703905.1 1,295 Chromosome
Dionaea muscipula Dionaea JAOWBR01 GCA_028571145.1 605.7 Scaffold
Tamarix chinensis Tamarix JANKMZ01 GCA_030549775.1 1,323 Chromosome
Fagopyrum tataricum Fagopyrum NCTC01 GCA_002319775.1 505.9 Chromosome
Hydrangea macrophylla Hydrangea JASDAS01 GCA_033977485.1 2,222 Chromosome
Actinidia arguta Actinidia BRYE01 GCA_030159115.1 645.1 Scaffold
Arctostaphylos glauca Arctostaphylos JAHSPW02 GCA_019985065.2 547.5 Scaffold
Rhododendron delavayi Rhododendron --- GCA_029882715.1 0.01372 Complete
Primula veris Primula CAVMKJ01 GCA_963682055.1 436.2 Chromosome
Camellia sinensis Camellia SDRB01 GCA_004153795.1 3,105 Scaffold
Camellia sinensis Camellia JACBKZ01 GCA_013676235.1 3,113 Chromosome
Camellia sinensis Camellia JAHQJM01 GCA_020536515.1 3,063 Chromosome
Camellia sinensis Camellia JAHQJX01 GCA_020536595.1 3,063 Chromosome

Citation

If you use CGRP in your scientific research, please cite us:

・CGRP: A comprehensive genome research platform integrating the gold-standard of polyploidization analyses for Cucurbitales

・An Overlooked Paleotetraploidization in Cucurbitaceae

・A common whole-genome paleotetraploidization in Cucurbitales

Update log

  • Aug. 22, 2022   The "Genome", Genome data collection and collation completed

  • Jun. 3, 2022   The "Reference", The literature search of Cucurbitales was completed

  • Mar. 11, 2022   The "Diagram", Related content statistics completed

  • Jan. 14, 2022   The "Tools", The gene family analysis tool has been installed

  • Dec. 6, 2021   The "Tools", blast, collinearity, ks related tools are installed

  • Nov. 6, 2021   The "Blast visualization", which can search function annotation and position, is now available

  • Aug. 27, 2020   The "KEGG pathway", The KEGG pathway of cucurbitales has been identified

  • Jul. 5, 2020   The "Gene function annotation", All gene function annotations of cucurbiturids have been predicted and added to CGRP

  • May. 15, 2020   The "Orthologous Gene", Orthologous genes from cucurbitaceae have been added to CGRP

  • Mar. 6, 2020   The "Transcription factors", All transcription factors predicted for cucurbitales have been added to CGRP

  • Feb. 9, 2020   “Duplication type”, A dataset of gene replication types of cucurbitales has been added to CGRP

  • Nov. 22, 2019   "Event-related genes", A set of event-related genes from cucurbiturids has been added to CGRP

  • Oct. 12, 2019   "Hierarchical alignments", Collinearity list of cucurrescence plants has been added to the CGRP

  • Sept. 6, 2019   "Colinear and KaKs", Collinear results from MCScanX and ColinearScan and corresponding ks results are added to CGRP, is now available

  • Sept. 5, 2018   "Dotplot", Bidirectional blastdots, blockdots, ksdots added to CGRP, is now available

  • Aug. 2, 2018   Cucurbitales genomics research platform (CGRP) is now open