Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00006 ATGCAAAGGAACGTCAACAGCGGCAGCACAATGGCGGCTCAGCCAGCATGCGCTGCCTGCAAGCACCAACGGAAGAAGTGCGACGACGCTTGCACACTGGCCCCATATTTTCCGGCAGACAAAACCAGAGAGTTCCAAGCCGTGCACCGAGTTTTCGGGGTGAGCAACGTGACGAAGCTGGTGAAAAACGTGAGCGAAATGGATCGAAACAAGACGGTGGATTCGTTAATCTGGGAAGCTCTGTGCAGGCAGAAGGATCCCGTTTCAGGTCCTTACGGAGAATACAGAAGAATTTACGACGAACTAAAGCTGTACAGAAGCCTAAACCAGACCCAAATGCTGAAAATAGCTGGGGTGGGGATGGGATGGAACAGTTCTTACGGGATAAATAACAAACCCAACAATGGAAATGGAGGGGGAATTATGAACACTACTAGTAATGGCATAAGCTACAGTAACAGTCATGATAATTGGAGTTCTATCATTGATTCTAGTCCTAATAGTTATCCTTCAACTTATACTCAAAGTCCAGAGATTTTACGGAGCGAAAGAGAGGCTTCGTCTGTTGTTCTTCCCCTTCAACACCAAACCCAGCAGTGCCATCTCCCCATCAATGGCCTTACGTTCCAGCAATACTATCTTTCAGGTACTATCTTTACGAGTTGA 666 47.15 MQRNVNSGSTMAAQPACAACKHQRKKCDDACTLAPYFPADKTREFQAVHRVFGVSNVTKLVKNVSEMDRNKTVDSLIWEALCRQKDPVSGPYGEYRRIYDELKLYRSLNQTQMLKIAGVGMGWNSSYGINNKPNNGNGGGIMNTTSNGISYSNSHDNWSSIIDSSPNSYPSTYTQSPEILRSEREASSVVLPLQHQTQQCHLPINGLTFQQYYLSGTIFTS 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 294688 295353 - Bda001661.1 Bda01g00006 6
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00006 221 Pfam Lateral organ boundaries (LOB) domain 16 106 IPR004883 -
Bda01g00006 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 9 216 - -
Bda01g00006 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 216 - -
Bda01g00006 221 ProSiteProfiles LOB domain profile. 15 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00006 Bda-Chr1:294688 Bda07g00873 Bda-Chr7:10197152 4.29E-23 dispersed
Bda01g00006 Bda-Chr1:294688 Bda01g01103 Bda-Chr1:45777636 5.20E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15323 PF03195 LOB 2.40E-32 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00006 - - mnt:112092179 209.149