Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00018 | ATGCAGATTACTCAGGCTGTATTTGAAAAGAACAACAGCGATTCCTTCCAAGTGAAAGTAATTAGGCAATTACTGTGGATTGATGAAGTTCGTTATGAGCTGCGAGAGATATTTGGTATTGGTAGCTCGTCAACCGATACTTTTGAGGGTGATGCCTCAGGAGAGGAGTGTGTCATTTGTATGACTGAGCCCAAGGATACTGCGGTGTTACCTTGCCGACATATGTGTTTGTGTAGTGAATGTGCAAAAGAACTGAAGCTTCAATCCAATAAATGCCCTATATGTCGTCAGCCAATTGAGGAACTTTTAGAGATCAAAATAAACAACGGTGATAAGTGA | 339 | 41.0 | MQITQAVFEKNNSDSFQVKVIRQLLWIDEVRYELREIFGIGSSSTDTFEGDASGEECVICMTEPKDTAVLPCRHMCLCSECAKELKLQSNKCPICRQPIEELLEIKINNGDK | 112 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 608411 | 609167 | - | Bda001677.1 | Bda01g00018 | 18 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00018 | 112 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 111 | - | - | |
Bda01g00018 | 112 | Pfam | Zinc finger, C3HC4 type (RING finger) | 55 | 101 | - | - | |
Bda01g00018 | 112 | PANTHER | MAHOGUNIN | 1 | 111 | IPR045194 | GO:0061630 | |
Bda01g00018 | 112 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 96 | IPR001841 | - | |
Bda01g00018 | 112 | SUPERFAMILY | RING/U-box | 56 | 102 | - | - | |
Bda01g00018 | 112 | SMART | ring_2 | 57 | 95 | IPR001841 | - | |
Bda01g00018 | 112 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 110 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00018 | Bda-Chr1:608411 | Bda05g01235 | Bda-Chr5:60224938 | 8.39E-48 | dispersed | |
Bda04g00476 | Bda-Chr4:53136399 | Bda01g00018 | Bda-Chr1:608411 | 1.09E-06 | dispersed | |
Bda01g00018 | Bda-Chr1:608411 | Bda05g01232 | Bda-Chr5:60205097 | 8.39E-48 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00018 | - | - | cpep:111786064 | 197.208 |