Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00018 ATGCAGATTACTCAGGCTGTATTTGAAAAGAACAACAGCGATTCCTTCCAAGTGAAAGTAATTAGGCAATTACTGTGGATTGATGAAGTTCGTTATGAGCTGCGAGAGATATTTGGTATTGGTAGCTCGTCAACCGATACTTTTGAGGGTGATGCCTCAGGAGAGGAGTGTGTCATTTGTATGACTGAGCCCAAGGATACTGCGGTGTTACCTTGCCGACATATGTGTTTGTGTAGTGAATGTGCAAAAGAACTGAAGCTTCAATCCAATAAATGCCCTATATGTCGTCAGCCAATTGAGGAACTTTTAGAGATCAAAATAAACAACGGTGATAAGTGA 339 41.0 MQITQAVFEKNNSDSFQVKVIRQLLWIDEVRYELREIFGIGSSSTDTFEGDASGEECVICMTEPKDTAVLPCRHMCLCSECAKELKLQSNKCPICRQPIEELLEIKINNGDK 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 608411 609167 - Bda001677.1 Bda01g00018 18
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00018 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 111 - -
Bda01g00018 112 Pfam Zinc finger, C3HC4 type (RING finger) 55 101 - -
Bda01g00018 112 PANTHER MAHOGUNIN 1 111 IPR045194 GO:0061630
Bda01g00018 112 ProSiteProfiles Zinc finger RING-type profile. 57 96 IPR001841 -
Bda01g00018 112 SUPERFAMILY RING/U-box 56 102 - -
Bda01g00018 112 SMART ring_2 57 95 IPR001841 -
Bda01g00018 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 110 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00018 Bda-Chr1:608411 Bda05g01235 Bda-Chr5:60224938 8.39E-48 dispersed
Bda04g00476 Bda-Chr4:53136399 Bda01g00018 Bda-Chr1:608411 1.09E-06 dispersed
Bda01g00018 Bda-Chr1:608411 Bda05g01232 Bda-Chr5:60205097 8.39E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00018 - - cpep:111786064 197.208