Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00060 ATGGCGGTATCTCCCAAAGCTTTTCCTTTGAGAAAGCGGCGGCCATCGGCCGGAGCTTTCATATCTCCCAAATTAACGGGCATCAATCTCCTCCAATCACTGCTCTCCCTCTGTCGAGAAATCACGTCGATGAAGCCCCACGAGTTCCCCCTAAAGCGCAATTCCCTCTCCCTCATTCGCAAAACCAAGATCCTCGCTGCTCTTTTTGAAGAGCTTCTTCAAAATCCTCTCTCATTCTCCCACTCCGCCTCCCTTTGCTTAGAAGAAATGTACGTCGTTTTGCAGAGAATCAAAGCTCTGATCGAAGACTGTTCCGTTGGAAGCAAGATGTGGCTGCTCGTGCAGATTGAATCACTGGCTGATAATTTTCAGGAGCTCACAATTGATTTATCGACTCTGCTTGATATTATACTGGTCAAAAAGGCTGGTTTGAATGAGGACGTGGAAGAACTCGTTTGTTTACTCAGAAAACAATGTTTGGAATCCAAAGCTTTGGTTGATCCGAGAGATGCAGATCTAAGACTGCAGGTTTTAACGATGCTTGATCAGATCAAAAACGAAATTATTCCCAATGATACCAAGCTTTCAGAAATTTTCTCCAAGTTAGGGATAAGCGACTCCTCGAGCTGCAGAGAGGAAATCGAGAATCTCGAAGACGAAGTTCAGATTCAAACGGATCAAAAGTCAAAGGCCGATACGATCGCTCTGATAGGGCTCGTTCGATACACGAAATGCGTTCTCTTCGGAGCCTCCACGCCTGATAAAGTCTATCAGCCGATGAAATCGATGACAGAAATGGGAATACCGGCCGATTTCAGGTGTCCGATTAGCCTCGAAATGATGAAAGATCCGGTGGTCATCGCCACAGGACAGACGTACGATCGGGCATCCATCAACTTCTGGATTGAATCTGGACACAACACGTGTCCAAAGACAGGTCAGACCCTGGCCCACACGAACCTAATCCCCAACCGAGCGTTAAGAAACTTGATAGCAATGTGGTGCCGTCATCATAGAATCCCCTTCGATCCGACGGAGAGTGGAGAGGGAGTCAATGGGACTCCGACGAACAAGGCGGCGATTGAAGCGACGAGAATGACTGCGTCGTTTCTCGTGAACAAGCTATCTGCCTCTTTGTCACCGGAGGCTGCTAATAGCATTGCCTATGAGCTGCGCGTTCTGGCCAAAACGGACTCCGACAGCCGAGGATTCATCGCCGAGGCGGGAGCGATTCCCCTGCTGGTTGGTTTCCTGAACTCGAAGCACCCTAACCTACAGGTTAACGCTGTAACGACGATCCTCAATCTTTCCATCCTCGAAGCGAACAAGAGGAGGATAATGGAGATGGAGGGAGCTTTAAGCGGTATCGTGGAAGTGATTCATTCAGGCGCGATGTGGGAGGCGAAGGGAAATGCGGCGGCTACGGTGTTCAGCTTGTCCGCTGACCATTCTTACAGAAGGAGAATTGGAAGGAAGACGGGTTTGATTAAGGCGTTGTTGGATTTGGGCAATTCGAAGAGAGATGCGATGATGGCGATTTTGAATCTGGCGGCTGATAGGGAGACGGTTGGGCGATTGATTGAGGGTGGAGTGATGGGGACGGTCAGACATCTTATCGATGAACTACCAGAGGAGGCGGTGACCATCCTGGAGGTGGTGGTGAGAAGGGGAGGAGTGCCAGCAGTTGCTTCATCCTACAACTTCATGAAGAAATTAAGCTCGTTGTTCAGGAACGGTTCCGACAGAACAAGGGAGAGTGCAGCGGCGACTCTGGTCAACATTTGCCGGAAAGGTGGCTCGGAGGCGGTAGCTGAAGTTGCGGCGATTCCGGGGATAGAGAGACTTGTGTGGGAGGTCATGGGAAGTGGAACTCCGAGAGGAAGAAGAAAAGCTGCGTCGCTCTTGAGGATTCTACGACGATGGGCGGCCGGCCTGGGCGGCAACAGTTCGATTCCGGATTCATCGAGAACGTCCTTGGCAGTGGCAATCACCCATTAA 1998 50.35 MAVSPKAFPLRKRRPSAGAFISPKLTGINLLQSLLSLCREITSMKPHEFPLKRNSLSLIRKTKILAALFEELLQNPLSFSHSASLCLEEMYVVLQRIKALIEDCSVGSKMWLLVQIESLADNFQELTIDLSTLLDIILVKKAGLNEDVEELVCLLRKQCLESKALVDPRDADLRLQVLTMLDQIKNEIIPNDTKLSEIFSKLGISDSSSCREEIENLEDEVQIQTDQKSKADTIALIGLVRYTKCVLFGASTPDKVYQPMKSMTEMGIPADFRCPISLEMMKDPVVIATGQTYDRASINFWIESGHNTCPKTGQTLAHTNLIPNRALRNLIAMWCRHHRIPFDPTESGEGVNGTPTNKAAIEATRMTASFLVNKLSASLSPEAANSIAYELRVLAKTDSDSRGFIAEAGAIPLLVGFLNSKHPNLQVNAVTTILNLSILEANKRRIMEMEGALSGIVEVIHSGAMWEAKGNAAATVFSLSADHSYRRRIGRKTGLIKALLDLGNSKRDAMMAILNLAADRETVGRLIEGGVMGTVRHLIDELPEEAVTILEVVVRRGGVPAVASSYNFMKKLSSLFRNGSDRTRESAAATLVNICRKGGSEAVAEVAAIPGIERLVWEVMGSGTPRGRRKAASLLRILRRWAAGLGGNSSIPDSSRTSLAVAITH 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11196588 11198601 + Bda001826.1 Bda01g00060 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00060 665 PANTHER U BOX DOMAIN-CONTAINING 11 653 - -
Bda01g00060 665 SUPERFAMILY ARM repeat 369 638 IPR016024 -
Bda01g00060 665 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Bda01g00060 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 341 IPR013083 -
Bda01g00060 665 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Bda01g00060 665 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Bda01g00060 665 SMART arm_5 398 438 IPR000225 GO:0005515
Bda01g00060 665 SMART arm_5 555 596 IPR000225 GO:0005515
Bda01g00060 665 CDD RING-Ubox_PUB 272 314 IPR045210 -
Bda01g00060 665 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 653 - -
Bda01g00060 665 SUPERFAMILY RING/U-box 262 341 - -
Bda01g00060 665 Coils Coil 207 234 - -
Bda01g00060 665 Gene3D - 351 532 IPR011989 -
Bda01g00060 665 Gene3D - 540 646 IPR011989 -
Bda01g00060 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Bda01g00060 665 Gene3D - 25 139 IPR036537 GO:0007166
Bda01g00060 665 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00060 Bda-Chr1:11196588 Bda07g00963 Bda-Chr7:11504151 6.46E-10 dispersed
Bda01g00060 Bda-Chr1:11196588 Bda15g00313 Bda-Chr15:5969027 1.32E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00060 - - tcc:18602242 863.988