Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00074 | ATGATATCTGTGTTCGTGATTAGGGTTAGGACGTTCACACCCATGGAGGCGACTGATAGCGATCCTGACTCCTATCGAACTCCTTCCGCAAGTGACACTCGACGATACGGGATGCTATCTGCTTCTAATATAATTCAAGCGCCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTACGAGGACGATCGAGTTTCCAAGAAACAGAGCCTTTGGTGAATGGCCGTATACACCCAGGGTTTCGCGATCGGCTACATAGGCAGCTTGGGGAATCTACGGGTGCCAACAATGATGGGGAGGTTTCTATCAGGATAATCGGTGCTGGAGAAGAACTTGAACGGGAAGCCACTGGGTTAGTTGTCGGTCAATCTAGGGAAGTTGCTTCCCAAAATGAGGTATCTATGCTGCAATCAATTCCAGGGTTGACCTTGACAACATTAGCCTCGGAAGGTGGTCAGGAAGATTCTAGAAACGACGGACGTGCAGAAGAAGGCATTTCCCAATCAGCCAATGGAGGTTCTTTTGGGCAAACCACAGATGGAGCTGGGGCAAATGGCAGAGATTCTTCTTACCAAAGGTACGATATTCAGCAGGCAGCTAGGTGGGTTGAGCAGGTCCTCCCTTTCAGTTTACTCTTGTTGGTTGTCTTCATCCGGCAACATTTACAGGGATTCTTTGTGACAATTTGGATAACTGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGTGAGAGGAAACTTTCTGTTTTGATTAGCATCACTCTTGCATTTACAATGCACGTGGTGGGTGTTTACTGGTGGTACCAGAATGATGATCTTCTGTATCCACTGGTTATGCTTCCTCCCAGAACAATTCCTCCGTTTTGGCATGCGATTTTTATCATTATGGTTAATGATACCTTGGTTCGGCAGGCTGCGATGGCATTCAAGTGTGTTCTGTTAATTCATTTCAAGAACAGTAGGGGACGTCAATATCGCAAACAGGGTCAAATGCTGACATTGGTTGAGTATCTGCTTCTGCTATACCGTGCCCTATTGCCCACTCCTGTATGGTATCGTTTCTTCTTGAACAAAGATTATGGAAGTTTGTTTTCATCACTGATGACGGGACTGTATTTAACTTTTAAGCTCACGTCCATTGTTGAAAAGCTGCAATCTTTCTTTGCAGCGGCAAAGGCATTGTCACGAAAAGAGGTGCATTATGGGGCCTATGCAACATCAGAGCAGGTAGCTTTGAGGAAAAATTATCTGGTGCACCAACCCACATACTATCTCATGCAGGTCAATGCAGCAGGTGATCTGTGTGCTATTTGCCAGGAGAAGATGCATACTCCTGTCCTGCTTTGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCGGAATGGTTTGAGAGAGAGAGAACATGCCCATTGTGCAGGGCTCTGGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCAACCAGTTTGTTTTTCCAGTTGTTTTAA | 1509 | 45.86 | MISVFVIRVRTFTPMEATDSDPDSYRTPSASDTRRYGMLSASNIIQAPLSALLEYSGLLRGRSSFQETEPLVNGRIHPGFRDRLHRQLGESTGANNDGEVSIRIIGAGEELEREATGLVVGQSREVASQNEVSMLQSIPGLTLTTLASEGGQEDSRNDGRAEEGISQSANGGSFGQTTDGAGANGRDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISITLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIIMVNDTLVRQAAMAFKCVLLIHFKNSRGRQYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAAKALSRKEVHYGAYATSEQVALRKNYLVHQPTYYLMQVNAAGDLCAICQEKMHTPVLLCCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11943656 | 11952553 | + | Bda001841.1 | Bda01g00074 | 74 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00074 | 502 | CDD | RING-HC_RNFT1_like | 440 | 479 | - | - | |
Bda01g00074 | 502 | MobiDBLite | consensus disorder prediction | 148 | 186 | - | - | |
Bda01g00074 | 502 | Pfam | Zinc finger, C3HC4 type (RING finger) | 439 | 482 | - | - | |
Bda01g00074 | 502 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 428 | 493 | IPR013083 | - | |
Bda01g00074 | 502 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 432 | 502 | IPR044235 | GO:0061630|GO:1904294 | |
Bda01g00074 | 502 | ProSiteProfiles | Zinc finger RING-type profile. | 441 | 479 | IPR001841 | - | |
Bda01g00074 | 502 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 15 | 417 | - | - | |
Bda01g00074 | 502 | SUPERFAMILY | RING/U-box | 427 | 484 | - | - | |
Bda01g00074 | 502 | ProSitePatterns | Zinc finger RING-type signature. | 456 | 465 | IPR017907 | - | |
Bda01g00074 | 502 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 432 | 502 | - | - | |
Bda01g00074 | 502 | MobiDBLite | consensus disorder prediction | 162 | 186 | - | - | |
Bda01g00074 | 502 | SMART | ring_2 | 441 | 478 | IPR001841 | - | |
Bda01g00074 | 502 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 15 | 417 | IPR044235 | GO:0061630|GO:1904294 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00074 | Bda-Chr1:11943656 | Bda01g01345 | Bda-Chr1:49158843 | 7.90E-08 | dispersed | |
Bda01g00074 | Bda-Chr1:11943656 | Bda14g01099 | Bda-Chr14:9836609 | 8.29E-153 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00074 | - | K22379 | csv:101205267 | 703.745 |