Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00074 ATGATATCTGTGTTCGTGATTAGGGTTAGGACGTTCACACCCATGGAGGCGACTGATAGCGATCCTGACTCCTATCGAACTCCTTCCGCAAGTGACACTCGACGATACGGGATGCTATCTGCTTCTAATATAATTCAAGCGCCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTACGAGGACGATCGAGTTTCCAAGAAACAGAGCCTTTGGTGAATGGCCGTATACACCCAGGGTTTCGCGATCGGCTACATAGGCAGCTTGGGGAATCTACGGGTGCCAACAATGATGGGGAGGTTTCTATCAGGATAATCGGTGCTGGAGAAGAACTTGAACGGGAAGCCACTGGGTTAGTTGTCGGTCAATCTAGGGAAGTTGCTTCCCAAAATGAGGTATCTATGCTGCAATCAATTCCAGGGTTGACCTTGACAACATTAGCCTCGGAAGGTGGTCAGGAAGATTCTAGAAACGACGGACGTGCAGAAGAAGGCATTTCCCAATCAGCCAATGGAGGTTCTTTTGGGCAAACCACAGATGGAGCTGGGGCAAATGGCAGAGATTCTTCTTACCAAAGGTACGATATTCAGCAGGCAGCTAGGTGGGTTGAGCAGGTCCTCCCTTTCAGTTTACTCTTGTTGGTTGTCTTCATCCGGCAACATTTACAGGGATTCTTTGTGACAATTTGGATAACTGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGTGAGAGGAAACTTTCTGTTTTGATTAGCATCACTCTTGCATTTACAATGCACGTGGTGGGTGTTTACTGGTGGTACCAGAATGATGATCTTCTGTATCCACTGGTTATGCTTCCTCCCAGAACAATTCCTCCGTTTTGGCATGCGATTTTTATCATTATGGTTAATGATACCTTGGTTCGGCAGGCTGCGATGGCATTCAAGTGTGTTCTGTTAATTCATTTCAAGAACAGTAGGGGACGTCAATATCGCAAACAGGGTCAAATGCTGACATTGGTTGAGTATCTGCTTCTGCTATACCGTGCCCTATTGCCCACTCCTGTATGGTATCGTTTCTTCTTGAACAAAGATTATGGAAGTTTGTTTTCATCACTGATGACGGGACTGTATTTAACTTTTAAGCTCACGTCCATTGTTGAAAAGCTGCAATCTTTCTTTGCAGCGGCAAAGGCATTGTCACGAAAAGAGGTGCATTATGGGGCCTATGCAACATCAGAGCAGGTAGCTTTGAGGAAAAATTATCTGGTGCACCAACCCACATACTATCTCATGCAGGTCAATGCAGCAGGTGATCTGTGTGCTATTTGCCAGGAGAAGATGCATACTCCTGTCCTGCTTTGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCGGAATGGTTTGAGAGAGAGAGAACATGCCCATTGTGCAGGGCTCTGGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCAACCAGTTTGTTTTTCCAGTTGTTTTAA 1509 45.86 MISVFVIRVRTFTPMEATDSDPDSYRTPSASDTRRYGMLSASNIIQAPLSALLEYSGLLRGRSSFQETEPLVNGRIHPGFRDRLHRQLGESTGANNDGEVSIRIIGAGEELEREATGLVVGQSREVASQNEVSMLQSIPGLTLTTLASEGGQEDSRNDGRAEEGISQSANGGSFGQTTDGAGANGRDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISITLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIIMVNDTLVRQAAMAFKCVLLIHFKNSRGRQYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAAKALSRKEVHYGAYATSEQVALRKNYLVHQPTYYLMQVNAAGDLCAICQEKMHTPVLLCCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11943656 11952553 + Bda001841.1 Bda01g00074 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00074 502 CDD RING-HC_RNFT1_like 440 479 - -
Bda01g00074 502 MobiDBLite consensus disorder prediction 148 186 - -
Bda01g00074 502 Pfam Zinc finger, C3HC4 type (RING finger) 439 482 - -
Bda01g00074 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 493 IPR013083 -
Bda01g00074 502 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 432 502 IPR044235 GO:0061630|GO:1904294
Bda01g00074 502 ProSiteProfiles Zinc finger RING-type profile. 441 479 IPR001841 -
Bda01g00074 502 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 417 - -
Bda01g00074 502 SUPERFAMILY RING/U-box 427 484 - -
Bda01g00074 502 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Bda01g00074 502 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 432 502 - -
Bda01g00074 502 MobiDBLite consensus disorder prediction 162 186 - -
Bda01g00074 502 SMART ring_2 441 478 IPR001841 -
Bda01g00074 502 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 417 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00074 Bda-Chr1:11943656 Bda01g01345 Bda-Chr1:49158843 7.90E-08 dispersed
Bda01g00074 Bda-Chr1:11943656 Bda14g01099 Bda-Chr14:9836609 8.29E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00074 - K22379 csv:101205267 703.745