Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00078 ATGGAGAAGTACGAGAAACTGGAGAAGGTGGGAGAGGGAACGTATGGGAAGGTGTACAAGGCGAAAGACAAGGAGTCCGGCCAGTTTGTGGCCCTCAAGAAAACTCGGCTGGAAATGGACGAGGAGGGTATCCCGCCCACCGCTCTTCGTGAGGTTTCCCTTCTTCAATTGCTCTCTCAGTCCCTCTACGTCGTCCGCCTCCTCTGCGTCGAACATGTCCATAACCATAAGAACGGTAAATCCCTTCTCTACCTCGTCTTTGAGTACCTCGATACTGACCTTAAGAAGTTCATCGACTCTCATCGTAAGGGTCCCAACCCTAGGCCTCTCCCCGCCTCTCTCATTCAGAGCTTCCTATTCCAACTTTTCAAGGGCGTCGCCCACTGTCACAGCCACGGCGTTCTCCATCGCGATCTAAAGCCCCAGAATCTCCTTCTTGATCAGAGTAAGGGTATCCTCAAAATTGCAGATCTCGGCCTTGGTCGCGCCTTCACTGTCCCCCTTAAGAGCTACACACACGAAGTTGTCACTCTCTGGTACAGGGCTCCAGAAGTCCTCCTTGGCTCCACTCATTACTCTACTGCGGTCGACATGTGGTCCGTTGGCTGCATTTTTGCTGAGATGGTAAGACGGCAGGCTTTGTTCCCTGGAGATTCAGAGTTCCAACAATTACTCCACATTTTCAGGCTGCTAGGAACTCCCAATGAGAAGCAGTGGCCTGGTGTATCTTCACTTCGGGATTGGCATGTCTATCCTCAATGGGAGCCTCAAAACCTTGCTCGAGCTGTTCCTGCTCTTGGATCTGATGGCGTTGACCTTCTTTCGAAAATGCTTCTATACGATCCGGCTGAGAGGATTTCAGCCAAAGCAGCGATGAATCATGCCTACTTCGACAGTCTTGATAAGTCTCAATTCTGA 918 51.09 MEKYEKLEKVGEGTYGKVYKAKDKESGQFVALKKTRLEMDEEGIPPTALREVSLLQLLSQSLYVVRLLCVEHVHNHKNGKSLLYLVFEYLDTDLKKFIDSHRKGPNPRPLPASLIQSFLFQLFKGVAHCHSHGVLHRDLKPQNLLLDQSKGILKIADLGLGRAFTVPLKSYTHEVVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPNEKQWPGVSSLRDWHVYPQWEPQNLARAVPALGSDGVDLLSKMLLYDPAERISAKAAMNHAYFDSLDKSQF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12078676 12081086 + Bda001845.1 Bda01g00078 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00078 305 PANTHER CELL DIVISION PROTEIN KINASE 1 305 - -
Bda01g00078 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00078 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Bda01g00078 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00078 305 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 305 - -
Bda01g00078 305 Gene3D Transferase(Phosphotransferase) domain 1 92 304 - -
Bda01g00078 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Bda01g00078 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Bda01g00078 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00078 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00078 Bda-Chr1:12078676 Bda14g00385 Bda-Chr14:2781591 3.18E-120 dispersed
Bda01g02095 Bda-Chr1:57081341 Bda01g00078 Bda-Chr1:12078676 2.53E-15 dispersed
Bda01g00078 Bda-Chr1:12078676 Bda15g00140 Bda-Chr15:3843627 1.11E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69412 PF00069 Pkinase 1.90E-65 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00078 K07760 - csv:101204557 562.762