Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00083 ATGGCTCCTTGTGCTCTGCATCGCGTCACCAATCTCAGTTGTAATAACAATAGCTTCGGGATTGACGAACAACTGAACAGCGTCTCCAACGGGAAGATGGTGAGGAAGAGAATAGCTTCCGAAATGGATATAGAAGCCCCCGCCACCACACCCACCGTCGTTCAGCCCAAGTTTTGCCGCCGAAGTCATGCCACTACCACCGGCGGACCTACGCCCCCGGCCACACACGTCGCTGAGACGAGGACCAACAACTCTACTAGTACGAATTTGATGAGCATGACGTCAGGAGATGGGTTGTTATCCACTGTTGCTTCGACTAATCCGTCTCACGTCCACACTACCTTTCCCGTCATTTTTAATCAACAACCCGACCAGGGCCACGAGGTGTGCGGATTCTCAGGCCTGCCCGTGTTCCAGCCAGAGTGGAATCGAAAGGTCTCAATTCAGGCAAATTCTGCCCTCTCCATCAATAGTAGTAGTCTGAGCATGGATGATACCTCCGCCGCCGCATGGATAGATGGAATCATAAAGGACCTCATCAACAGCTCCACTAACGTCTCCGTTCCGCAGCTAATCCAAAACGTACAGGAAATCATCTATCCTTGCAATCCTAACCTCGCGACCCTCCTTGAGTACCGTCTCCGCTCCCTCACCGATCCGAATCCAAGCAGCTATTCGTCGGAGGATCAAAGGAGGCTTTTTCAACAGCTACCGTTACCCATGGAAAGCTTCGCTTTGCAGCAGCGCCAATATTATCAACAACCCTGCTCTCCTCTAAAGCTTAATCTAGACACCACCCTTCCCAGTTTCCCTCCGCCTCCTACCAATTCCGCCGACGAGCAAGATACGTTCATGCACTGGGGGGGAGCACCACTCTCTAATCCAAGTACTACACCTGGCACAGAAGAAACCGGGCAGCGTATTCCTGACCTTTCTCCCAATCCTTCTGTTCTATCCTTGAATCAGGTACCTCATGCCCACCAACAATCTGAGCAGCGAAATTCAGAATCCTTCCCAAAGCCAACGGGAACACAATCTAATACTAGCACCAGTACTATTTCGTCTGCTACTCTCATTAGAGAAAAGAAAGAAGAAATGCGACAGCTGAAGAGGGACGAGGATGGCTTGCACCTGCTTACCTTACTTCTTCAATGTGCAGAAGCAGTGTCTGCTGATAACTTGGAAGAAGCTAACACGATGCTACTGGAGATATCAGAGCTGTCTACCCCTTTTGGAACGTCGGCTCAGCGAGTGGCTGCATATTTCTCGGAAGCGATGTCGGCAAGACTAGTTAGCTCGTGCCTGGGAATATATGCAGCCGTTCCATCAGCATCATTGCCACTCACGCTTTCCCAGAAGGTGGCGTCCGCGTTCCAGGTATTCAACGGCATCAGCCCTTTCGTCAAATTCTCACATTTCACGGCCAATCAGGCCATACAGGAAGCGTTCGAGAGGGAGGAGAGGGTTCACATCATAGATCTGGACATCATGCAAGGGCTGCAGTGGCCGGGATTGTTTCATATTCTGGCATCTAGACAGGGTGGTCCTCCATATGTGCGGCTAACTGGACTAGGGACCTCTCTCGAGACCCTGGAGGCCACCGGCAAGCGCCTATCTGATTTTGCAGAAAAGCTGGGCCTTCCTTTCGAGTTTTTTCCAGTGGCTGATAAAATTGGCAACTTGGACCCAGAGAGGCTAAATGTCAGCAAGAGGGAGGCCGTTGCGGTCCACTGGTTGCAGCATTCCCTATACGATGTCACGGGTTCGGATTCTAATATGCTGTGGCTTTTACAGAGACTAGCGCCAAAGGTGGTAACAGTGGTGGAGCAGGACCTGCGGCATGCAGGGTCTTTCTTAGGAAGGTTCGTGGAGGCCATTCATTATTACTCGGCCCTGTTCGACTCGCTAGGAGCCAGCTACGGAGAAGATAGCGAAGAGAGGCACGTGGTGGAGCAGCAACTGCTGTCGAGGGAGATCCGCAATGTCCTAGCGGTCGGGGGGCCGTCGAGGAGCGGGGAGGTCAAGTTCCACAACTGGAGGGAGAAACTCAACCAGTCTGGGTTCAAGGGCGTCTCTCTATCTGGGAACGCCGCCACCCAAGCCACCCTTCTACTCGGCATGTTTCCGTCGGACGGCTACACCCTGGTGGAGGACAATGGCACTCTGAAGCTAGGATGGAAGGACCTTTCCTTGCTCACCGCTTCTGCATGGAGGCCTTCTTTCTATTCTACCACCAACCACATCCATCGTTATTGA 2256 52.3 MAPCALHRVTNLSCNNNSFGIDEQLNSVSNGKMVRKRIASEMDIEAPATTPTVVQPKFCRRSHATTTGGPTPPATHVAETRTNNSTSTNLMSMTSGDGLLSTVASTNPSHVHTTFPVIFNQQPDQGHEVCGFSGLPVFQPEWNRKVSIQANSALSINSSSLSMDDTSAAAWIDGIIKDLINSSTNVSVPQLIQNVQEIIYPCNPNLATLLEYRLRSLTDPNPSSYSSEDQRRLFQQLPLPMESFALQQRQYYQQPCSPLKLNLDTTLPSFPPPPTNSADEQDTFMHWGGAPLSNPSTTPGTEETGQRIPDLSPNPSVLSLNQVPHAHQQSEQRNSESFPKPTGTQSNTSTSTISSATLIREKKEEMRQLKRDEDGLHLLTLLLQCAEAVSADNLEEANTMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAAVPSASLPLTLSQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRQGGPPYVRLTGLGTSLETLEATGKRLSDFAEKLGLPFEFFPVADKIGNLDPERLNVSKREAVAVHWLQHSLYDVTGSDSNMLWLLQRLAPKVVTVVEQDLRHAGSFLGRFVEAIHYYSALFDSLGASYGEDSEERHVVEQQLLSREIRNVLAVGGPSRSGEVKFHNWREKLNQSGFKGVSLSGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLSLLTASAWRPSFYSTTNHIHRY 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12339467 12341911 + Bda001851.1 Bda01g00083 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00083 751 MobiDBLite consensus disorder prediction 290 357 - -
Bda01g00083 751 MobiDBLite consensus disorder prediction 264 360 - -
Bda01g00083 751 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 97 740 IPR005202 -
Bda01g00083 751 ProSiteProfiles GRAS family profile. 369 738 IPR005202 -
Bda01g00083 751 PANTHER PROTEIN SCARECROW 97 740 - -
Bda01g00083 751 Pfam GRAS domain family 379 738 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00083 Bda-Chr1:12339467 Bda07g01379 Bda-Chr7:16636008 4.44E-98 dispersed
Bda13g00312 Bda-Chr13:3939846 Bda01g00083 Bda-Chr1:12339467 1.54E-37 dispersed
Bda01g01419 Bda-Chr1:50101050 Bda01g00083 Bda-Chr1:12339467 7.47E-50 transposed
Bda04g00644 Bda-Chr4:55202080 Bda01g00083 Bda-Chr1:12339467 4.88E-133 transposed
Bda05g00646 Bda-Chr5:54656232 Bda01g00083 Bda-Chr1:12339467 9.60E-106 transposed
Bda01g00083 Bda-Chr1:12339467 Bda14g01092 Bda-Chr14:9748265 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15325 PF03514 GRAS 3.50E-126 CL0063 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00083 - - bhj:120074183 872.463