Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00096 ATGGAGAACACAGGTGATTTAACAGATATTATTCGAGCTAGTGGAGGAATCTATGGCTGTGGAGAAGCTGATTCTAATTCAAACACAAACCCTAGTTCAAACTGGCAATTTTCCTCCGAGCCCATGAATTTTTCTTCAGATTCTCTGGAAACTTTTGGAGATCCATTTTCCTGTACGAGAGATCCGCTGCGCCAGCTGCATGATATCTCTGCTTCTTCTATCGGTATCATCAGTGCAATTGATTGTGAAGAATCCGTCGGCTTTCCGGGAGTATTTTCCGGCGATTCAATGATTCTTCCTCAGAGAATTTTCCGTGATGAGATTAGAACTCCTAGAAATATTTTTTCCCGTACGCCTCAAATCTCTCCAACCACTATATTGCCCCTTACTTCTTGCGATCCACCATTGATGGTCAATTCTCCAAGCTCAATTAAGTCTTCTTACATGGTTTCCAATGACATAATTAATCCAATCGGCTTGAACAGTTGCTTAGTCGACAAGTCAACTATCCAGATCTCTTCCCCAAGAAATTCGGGTATCAAAAAAAGGAAGAGCCAGGCAAAGAAGGTTGTATGTATTCCAGCTCCAGCGCCTGCAAATAGTAGACCAAGTGGTGAAGTTGTTCCTTCTGATCTCTGGGCATGGAGAAAATATGGACAGAAACCCATTAAAGGTTCTCCATATCCAAGAGGATATTATAGATGTAGTAGCTCAAAAGGATGTTCAGCACGAAAACAAGTGGAGAGGAGCAGAACTGATCCAAACATGTTAGTCATCACCTACACTTCAGAGCATAACCATCCATGGCCGACTCAAAGAAATGCTCTTGCAGGCTCCACCCGTTCGCAACCATCAAGAAACAGCAGCAATGGAGATGCTTCAAAGCCCTCTAATGGCGGTCAGAGCCAAAAGATGACAAGTCCGAAGGAGGAGGAAGACGAAGAAGAACAGATGAAGGAAAATGAAGTTTCATCTGGTTTGTATGTTAAGGAAGAGATGGAGGAAGATCAGATCAAAGGGTTCGTAATGGAAGATGAAGATCAATTTATTGAAGCATTTTCTGGGTGTACTTCTGAGGATTTCTTTGCTGATTTGGGTGAAATACAAACTGACAGTTCTTTGAACCTCATTTTCGCGGAAGCTTTCTCGGGAAACAAACAGAACGATGGAAAGACCTTGGAGTACCCGTTTCCTCTATTTGATTGGACAGGAAACATCTCCACCCCCAACTCATCCTCATTTCATCAACAGAAGAAAGATTCTTGA 1266 42.5 MENTGDLTDIIRASGGIYGCGEADSNSNTNPSSNWQFSSEPMNFSSDSLETFGDPFSCTRDPLRQLHDISASSIGIISAIDCEESVGFPGVFSGDSMILPQRIFRDEIRTPRNIFSRTPQISPTTILPLTSCDPPLMVNSPSSIKSSYMVSNDIINPIGLNSCLVDKSTIQISSPRNSGIKKRKSQAKKVVCIPAPAPANSRPSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSRNSSNGDASKPSNGGQSQKMTSPKEEEDEEEQMKENEVSSGLYVKEEMEEDQIKGFVMEDEDQFIEAFSGCTSEDFFADLGEIQTDSSLNLIFAEAFSGNKQNDGKTLEYPFPLFDWTGNISTPNSSSFHQQKKDS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14103898 14106204 - Bda001880.1 Bda01g00096 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00096 421 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 4 405 - -
Bda01g00096 421 SMART WRKY_cls 209 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g00096 421 Pfam WRKY DNA -binding domain 211 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g00096 421 MobiDBLite consensus disorder prediction 234 330 - -
Bda01g00096 421 ProSiteProfiles WRKY domain profile. 204 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g00096 421 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 405 IPR044810 GO:0003700
Bda01g00096 421 SUPERFAMILY WRKY DNA-binding domain 207 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g00096 421 MobiDBLite consensus disorder prediction 253 305 - -
Bda01g00096 421 Gene3D WRKY domain 183 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00096 Bda-Chr1:14103898 Bda02g00486 Bda-Chr2:45736800 4.29E-102 dispersed
Bda04g00680 Bda-Chr4:55420440 Bda01g00096 Bda-Chr1:14103898 1.74E-34 dispersed
Bda01g00096 Bda-Chr1:14103898 Bda11g00236 Bda-Chr11:2806716 8.22E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15326 PF03106 WRKY 2.30E-25 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00096 - - jre:108988835 398.667