Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00098 ATGAAACAGTTTAAATTGGCCGCGGCAACTCATACTAAAGAGGATCATTCTGTAAAGGGCATTCAGACAATGGACCATTCTTCTGATTGCTCGGGGATTCCTCAACAACAACAGATCTCAAGTAGATGGCTTCCAGATGAAGCATGCAGGCCTATCATTGGCGAAGCACCTGTATATTATCCAACTATTGAGGAGTTTGAAGATACACTTGGTTACATAGCAAAGATTCGTGAGGAAGCAGAATCATATGGTATATGTCGGATTGTTCCTCCATCTTCATGGAATCCACCATGCATTCTCAAGGAGAAAGCCATATGGGAAAATGCCACATTTTCTACACGGATTCAGCTAGTTGACTTGCTACAAAACAGGGAACCCATGAGAAAAAAAGGTAGAGGCAGAAAAAGAAAACGAAGAAAGCATTCAAGAATGGGAACGTCAAGGAGGCGCACAAATCCTGGTTCTGACGTAAACATTTCATCTGAGACTGATGAAAAATTTGGATTCAACTCTGGGGCGGATTTTACTCTAGCTGATTTTCAGAGACATGCTGATTACTTTAAAAGGTGCTACTTTGGGATGAAAGAGGCAGAGGATGAAGTAGATGCCAGTGAAATTAAACCAAAGAAGAGATGGGAACCCTCTGTAGAGGAAATTGAAGGCGAGTACTGGCGGATAGTTGAGAAACCAACGGATGAGGTTGAGGTATACTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTCCCCAAGGCATCATCTGCATCAACCGAAAGCAATTCAGATGAGTATATGACTTCTGGGTGGAATCTTAATAACTTTCCACGCTTGCCAGGTTCTGTATTGTGCTTTGAAGGAAGTGATATCTCGGGAGTTCTGGTCCCATGGCTCTATATTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTAAACTATCTACACTTGGGTGATCCAAAAGTTTGGTATGGTGTTCCTGGAAGCCATGCTTCTATCTTAGAAACTACAATGAAGAAGCATTTGCCAGATTTGTTTGAAGAACAGCCAGATTTACTGCATGAGTTGGTTACTCAGCTATCACCTTCGGTTCTCAAATCAGAAGGAGTGCCAGTATATCGTGCTGTTCAACATGCGAGGGAGTTTGTTCTGACATTTCCGAGGGCATACCATTCGGGATTCAATTGTGGTTTTAATTGTGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGTTCATGGTCAAAATGCAGTGGAGCTCTATAGTGAGCAGCGTCACAAGACATCAGTGTCCCATGACAAATTATTACTTGGTTCAGCTCAGGCAGCTGTTCAAGCTCTTTGGGAGATTTTTGTTCTTGGAAAGGAAACTCCTAAAACTTTGAGATGGAAATTTGTGTGTGGGAAAGATGGGGCCCTCACAAAGGCAGTAAAGGCCAGGATACAAATGGAGTCAGAGAGAATGGATTGCCTTCCAATTCATTTGAAGTTGAAAAAGATGGATAGAGAATTTGATTGGGAGGAGAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTATCTGCGGTCAGCTGCAAGTGCTCTCCATGTCGTTTTTCATGCCTTAAACATGCAAATAAATTTTGTTCTTGTGAAATAGATCAAAGATTTGTTCTCATTCGTTATACTATAGAGGAACTCGATACACTTGTCGACGCCTTGGAAGAAGGATTAGAATCCATCAAACTATGGGCCACAGAGAACTGTCAAAAGATTTCTTCTTCCGTTAAAGGTGATTATCATGCAAATATGGAGTTAGAGAGAGAAACATGCAAATCTAAGTCAGACAACTCAGTAGAAAGATTTATCATTTCTGAAGAAACAGAGAAGAAGATGAAAATAGATCTTAATTGTGGTTCATATAGTCATGTATCGTCAGAAGTTGTGCAGTCAGAATTTCGAAAAGGATTATCAAGTCTAAGTTCATCCCAGAAACCAAGTGGTAGTAGTAATGCAGTTATCAAATGTGAAAATGTAGACTTGGGAAAAGAAGATCAAATTGTAGACTTGAACAAAAGAGAAGGCTTTATCGATTTAAATCTTGATATTATGTGCGAGGTTAAGGAAATTGGGTGTCTTGACTCATCCGATGATAAAATAATTGAAAATAAAGTAGAGCAGATTCACTTGTCAGATGGACGGCAAGATGCAAATCCTTTTTTGGACACAACTCATCCTTTGGGCTTGAGAGATTGTGGGAGACAAGATTTTGTTGGTAAGAAGCTGTTCGTGGCTGATGTTGGCTTTCCACCCATACATTCGAAATCAATACCTAGTAGTTTGTCAAAAATGAACGTTCAAGATTCCTTTGTACCAGAGCTAATGGACATTGGATCTGCCATGTTTGGAAACCTCTGGTGCAGTAGGCAGGCTATATTTCCGAAAGGATATAGAAGCCGTGTTAAATTCAAAAGTTTGCTTGATCCCACGGTAAGCGGCAGCTATGTATCAGAAGTTCTTGATGCTGGGTTTCTTGGCCCTCTATTCAAGGTTACATCTGAGCAATTTCCGAGTGAATCTTTTTCAAACGTCTCTGCTGATAAGTGCTGGGAAATGGTCGTGCGGAGAATAAACCAGGAAATCGATAGAAGGATGGGTCAATGTAAAAGACTCCATCCATTGCAGCCATTGCAAAGAATGAATGGGCTTCAAATGTTTGGTTTTCTCTCCCCACATATTAGACAGGCAATTGAGGCGCTCGATCCAGATCATAGATGCTTGGAGTATTGGAATAACCGGCAGTGCAATGGCGATATAAAAGTTAATTTTCCGTCGAGTCACTCTTCAGAAATTTCTAGAACAAATGCCTTTGATATCTTACATGGAAGCCTTTCTCTAGATGAATTTCAATCCGTGCTAAGAAGGCTGAAGATTCATAAATTCACAAGACACCCTGGATAG 2967 40.92 MKQFKLAAATHTKEDHSVKGIQTMDHSSDCSGIPQQQQISSRWLPDEACRPIIGEAPVYYPTIEEFEDTLGYIAKIREEAESYGICRIVPPSSWNPPCILKEKAIWENATFSTRIQLVDLLQNREPMRKKGRGRKRKRRKHSRMGTSRRRTNPGSDVNISSETDEKFGFNSGADFTLADFQRHADYFKRCYFGMKEAEDEVDASEIKPKKRWEPSVEEIEGEYWRIVEKPTDEVEVYYGADLETGVFGSGFPKASSASTESNSDEYMTSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASILETTMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRAVQHAREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSEQRHKTSVSHDKLLLGSAQAAVQALWEIFVLGKETPKTLRWKFVCGKDGALTKAVKARIQMESERMDCLPIHLKLKKMDREFDWEERECFSCFYDLHLSAVSCKCSPCRFSCLKHANKFCSCEIDQRFVLIRYTIEELDTLVDALEEGLESIKLWATENCQKISSSVKGDYHANMELERETCKSKSDNSVERFIISEETEKKMKIDLNCGSYSHVSSEVVQSEFRKGLSSLSSSQKPSGSSNAVIKCENVDLGKEDQIVDLNKREGFIDLNLDIMCEVKEIGCLDSSDDKIIENKVEQIHLSDGRQDANPFLDTTHPLGLRDCGRQDFVGKKLFVADVGFPPIHSKSIPSSLSKMNVQDSFVPELMDIGSAMFGNLWCSRQAIFPKGYRSRVKFKSLLDPTVSGSYVSEVLDAGFLGPLFKVTSEQFPSESFSNVSADKCWEMVVRRINQEIDRRMGQCKRLHPLQPLQRMNGLQMFGFLSPHIRQAIEALDPDHRCLEYWNNRQCNGDIKVNFPSSHSSEISRTNAFDILHGSLSLDEFQSVLRRLKIHKFTRHPG 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14265045 14272004 - Bda001885.1 Bda01g00098 98

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00098 988 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Bda01g00098 988 SMART fyrn_3 800 844 IPR003888 GO:0005634
Bda01g00098 988 MobiDBLite consensus disorder prediction 126 163 - -
Bda01g00098 988 MobiDBLite consensus disorder prediction 128 147 - -
Bda01g00098 988 Pfam F/Y-rich N-terminus 800 841 IPR003888 GO:0005634
Bda01g00098 988 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Bda01g00098 988 Pfam F/Y rich C-terminus 848 935 IPR003889 GO:0005634
Bda01g00098 988 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Bda01g00098 988 Gene3D - 795 929 - -
Bda01g00098 988 Pfam jmjN domain 57 90 IPR003349 -
Bda01g00098 988 ProSiteProfiles FYR domain FYRC motif profile. 846 935 IPR003889 GO:0005634
Bda01g00098 988 Gene3D Cupin 41 415 - -
Bda01g00098 988 ProSiteProfiles FYR domain FYRN motif profile. 786 844 IPR003888 GO:0005634
Bda01g00098 988 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Bda01g00098 988 MobiDBLite consensus disorder prediction 148 163 - -
Bda01g00098 988 SMART JmjN_1 55 96 IPR003349 -
Bda01g00098 988 SUPERFAMILY Clavaminate synthase-like 264 458 - -
Bda01g00098 988 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 936 - -
Bda01g00098 988 SMART cupin_9 265 431 IPR003347 -
Bda01g00098 988 SMART fyrc_3 850 942 IPR003889 GO:0005634
Bda01g00098 988 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 16 936 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00098 - - - zju:107433853 1122.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00098 Bda-Chr1:14265045 Bda12g00339 Bda-Chr12:3871656 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00339 . 1 878 JUMONJI Transcription Factor Family AT1G08620 55.6 7.6e-271 930.6
Bda01g00098 . 34 951 JUMONJI Transcription Factor Family AT1G30810 51.1 3.9e-247 851.3
Bda12g00339 . 128 734 JUMONJI Transcription Factor Family AT1G30810 55.6 8.7e-186 647.5
Bda12g00339 . 129 672 JUMONJI Transcription Factor Family AT2G34880 55.1 2.0e-171 599.7
Bda01g00098 . 64 935 JUMONJI Transcription Factor Family AT4G20400 51.1 6.5e-243 837.4
Bda12g00339 . 155 673 JUMONJI Transcription Factor Family AT4G20400 58.4 1.5e-178 623.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15327 PF02373 JmjC 1.50E-44 CL0029 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00098 Bda_Chr01 FPKM 4.773894 4.326449 10.387216 8.044462 6.261408 5.246703 6.734741 0.275394 0.0