Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00098 ATGAAACAGTTTAAATTGGCCGCGGCAACTCATACTAAAGAGGATCATTCTGTAAAGGGCATTCAGACAATGGACCATTCTTCTGATTGCTCGGGGATTCCTCAACAACAACAGATCTCAAGTAGATGGCTTCCAGATGAAGCATGCAGGCCTATCATTGGCGAAGCACCTGTATATTATCCAACTATTGAGGAGTTTGAAGATACACTTGGTTACATAGCAAAGATTCGTGAGGAAGCAGAATCATATGGTATATGTCGGATTGTTCCTCCATCTTCATGGAATCCACCATGCATTCTCAAGGAGAAAGCCATATGGGAAAATGCCACATTTTCTACACGGATTCAGCTAGTTGACTTGCTACAAAACAGGGAACCCATGAGAAAAAAAGGTAGAGGCAGAAAAAGAAAACGAAGAAAGCATTCAAGAATGGGAACGTCAAGGAGGCGCACAAATCCTGGTTCTGACGTAAACATTTCATCTGAGACTGATGAAAAATTTGGATTCAACTCTGGGGCGGATTTTACTCTAGCTGATTTTCAGAGACATGCTGATTACTTTAAAAGGTGCTACTTTGGGATGAAAGAGGCAGAGGATGAAGTAGATGCCAGTGAAATTAAACCAAAGAAGAGATGGGAACCCTCTGTAGAGGAAATTGAAGGCGAGTACTGGCGGATAGTTGAGAAACCAACGGATGAGGTTGAGGTATACTATGGAGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTCCCCAAGGCATCATCTGCATCAACCGAAAGCAATTCAGATGAGTATATGACTTCTGGGTGGAATCTTAATAACTTTCCACGCTTGCCAGGTTCTGTATTGTGCTTTGAAGGAAGTGATATCTCGGGAGTTCTGGTCCCATGGCTCTATATTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTAAACTATCTACACTTGGGTGATCCAAAAGTTTGGTATGGTGTTCCTGGAAGCCATGCTTCTATCTTAGAAACTACAATGAAGAAGCATTTGCCAGATTTGTTTGAAGAACAGCCAGATTTACTGCATGAGTTGGTTACTCAGCTATCACCTTCGGTTCTCAAATCAGAAGGAGTGCCAGTATATCGTGCTGTTCAACATGCGAGGGAGTTTGTTCTGACATTTCCGAGGGCATACCATTCGGGATTCAATTGTGGTTTTAATTGTGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGTTCATGGTCAAAATGCAGTGGAGCTCTATAGTGAGCAGCGTCACAAGACATCAGTGTCCCATGACAAATTATTACTTGGTTCAGCTCAGGCAGCTGTTCAAGCTCTTTGGGAGATTTTTGTTCTTGGAAAGGAAACTCCTAAAACTTTGAGATGGAAATTTGTGTGTGGGAAAGATGGGGCCCTCACAAAGGCAGTAAAGGCCAGGATACAAATGGAGTCAGAGAGAATGGATTGCCTTCCAATTCATTTGAAGTTGAAAAAGATGGATAGAGAATTTGATTGGGAGGAGAGGGAATGCTTTTCTTGCTTTTACGACTTACACTTATCTGCGGTCAGCTGCAAGTGCTCTCCATGTCGTTTTTCATGCCTTAAACATGCAAATAAATTTTGTTCTTGTGAAATAGATCAAAGATTTGTTCTCATTCGTTATACTATAGAGGAACTCGATACACTTGTCGACGCCTTGGAAGAAGGATTAGAATCCATCAAACTATGGGCCACAGAGAACTGTCAAAAGATTTCTTCTTCCGTTAAAGGTGATTATCATGCAAATATGGAGTTAGAGAGAGAAACATGCAAATCTAAGTCAGACAACTCAGTAGAAAGATTTATCATTTCTGAAGAAACAGAGAAGAAGATGAAAATAGATCTTAATTGTGGTTCATATAGTCATGTATCGTCAGAAGTTGTGCAGTCAGAATTTCGAAAAGGATTATCAAGTCTAAGTTCATCCCAGAAACCAAGTGGTAGTAGTAATGCAGTTATCAAATGTGAAAATGTAGACTTGGGAAAAGAAGATCAAATTGTAGACTTGAACAAAAGAGAAGGCTTTATCGATTTAAATCTTGATATTATGTGCGAGGTTAAGGAAATTGGGTGTCTTGACTCATCCGATGATAAAATAATTGAAAATAAAGTAGAGCAGATTCACTTGTCAGATGGACGGCAAGATGCAAATCCTTTTTTGGACACAACTCATCCTTTGGGCTTGAGAGATTGTGGGAGACAAGATTTTGTTGGTAAGAAGCTGTTCGTGGCTGATGTTGGCTTTCCACCCATACATTCGAAATCAATACCTAGTAGTTTGTCAAAAATGAACGTTCAAGATTCCTTTGTACCAGAGCTAATGGACATTGGATCTGCCATGTTTGGAAACCTCTGGTGCAGTAGGCAGGCTATATTTCCGAAAGGATATAGAAGCCGTGTTAAATTCAAAAGTTTGCTTGATCCCACGGTAAGCGGCAGCTATGTATCAGAAGTTCTTGATGCTGGGTTTCTTGGCCCTCTATTCAAGGTTACATCTGAGCAATTTCCGAGTGAATCTTTTTCAAACGTCTCTGCTGATAAGTGCTGGGAAATGGTCGTGCGGAGAATAAACCAGGAAATCGATAGAAGGATGGGTCAATGTAAAAGACTCCATCCATTGCAGCCATTGCAAAGAATGAATGGGCTTCAAATGTTTGGTTTTCTCTCCCCACATATTAGACAGGCAATTGAGGCGCTCGATCCAGATCATAGATGCTTGGAGTATTGGAATAACCGGCAGTGCAATGGCGATATAAAAGTTAATTTTCCGTCGAGTCACTCTTCAGAAATTTCTAGAACAAATGCCTTTGATATCTTACATGGAAGCCTTTCTCTAGATGAATTTCAATCCGTGCTAAGAAGGCTGAAGATTCATAAATTCACAAGACACCCTGGATAG 2967 40.92 MKQFKLAAATHTKEDHSVKGIQTMDHSSDCSGIPQQQQISSRWLPDEACRPIIGEAPVYYPTIEEFEDTLGYIAKIREEAESYGICRIVPPSSWNPPCILKEKAIWENATFSTRIQLVDLLQNREPMRKKGRGRKRKRRKHSRMGTSRRRTNPGSDVNISSETDEKFGFNSGADFTLADFQRHADYFKRCYFGMKEAEDEVDASEIKPKKRWEPSVEEIEGEYWRIVEKPTDEVEVYYGADLETGVFGSGFPKASSASTESNSDEYMTSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASILETTMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRAVQHAREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSEQRHKTSVSHDKLLLGSAQAAVQALWEIFVLGKETPKTLRWKFVCGKDGALTKAVKARIQMESERMDCLPIHLKLKKMDREFDWEERECFSCFYDLHLSAVSCKCSPCRFSCLKHANKFCSCEIDQRFVLIRYTIEELDTLVDALEEGLESIKLWATENCQKISSSVKGDYHANMELERETCKSKSDNSVERFIISEETEKKMKIDLNCGSYSHVSSEVVQSEFRKGLSSLSSSQKPSGSSNAVIKCENVDLGKEDQIVDLNKREGFIDLNLDIMCEVKEIGCLDSSDDKIIENKVEQIHLSDGRQDANPFLDTTHPLGLRDCGRQDFVGKKLFVADVGFPPIHSKSIPSSLSKMNVQDSFVPELMDIGSAMFGNLWCSRQAIFPKGYRSRVKFKSLLDPTVSGSYVSEVLDAGFLGPLFKVTSEQFPSESFSNVSADKCWEMVVRRINQEIDRRMGQCKRLHPLQPLQRMNGLQMFGFLSPHIRQAIEALDPDHRCLEYWNNRQCNGDIKVNFPSSHSSEISRTNAFDILHGSLSLDEFQSVLRRLKIHKFTRHPG 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14265045 14272004 - Bda001885.1 Bda01g00098 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00098 988 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Bda01g00098 988 SMART fyrn_3 800 844 IPR003888 GO:0005634
Bda01g00098 988 MobiDBLite consensus disorder prediction 126 163 - -
Bda01g00098 988 MobiDBLite consensus disorder prediction 128 147 - -
Bda01g00098 988 Pfam F/Y-rich N-terminus 800 841 IPR003888 GO:0005634
Bda01g00098 988 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Bda01g00098 988 Pfam F/Y rich C-terminus 848 935 IPR003889 GO:0005634
Bda01g00098 988 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Bda01g00098 988 Gene3D - 795 929 - -
Bda01g00098 988 Pfam jmjN domain 57 90 IPR003349 -
Bda01g00098 988 ProSiteProfiles FYR domain FYRC motif profile. 846 935 IPR003889 GO:0005634
Bda01g00098 988 Gene3D Cupin 41 415 - -
Bda01g00098 988 ProSiteProfiles FYR domain FYRN motif profile. 786 844 IPR003888 GO:0005634
Bda01g00098 988 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Bda01g00098 988 MobiDBLite consensus disorder prediction 148 163 - -
Bda01g00098 988 SMART JmjN_1 55 96 IPR003349 -
Bda01g00098 988 SUPERFAMILY Clavaminate synthase-like 264 458 - -
Bda01g00098 988 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 936 - -
Bda01g00098 988 SMART cupin_9 265 431 IPR003347 -
Bda01g00098 988 SMART fyrc_3 850 942 IPR003889 GO:0005634
Bda01g00098 988 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 16 936 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00098 Bda-Chr1:14265045 Bda12g00339 Bda-Chr12:3871656 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15327 PF02373 JmjC 1.50E-44 CL0029 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00098 - - zju:107433853 1122.84