Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g00137 | ATGGGATTGGTTAGGCACCTGAATGTGGTCGAGCTTTACAAAGTGATGGCAAGCAAAACTAAGATCTACTTCGTTATGGAGTACATGAAAGGAGGGGAGTTGGTTGACAAGGTCGCGGAAGGAAAGCTGAAGGAGGATATCGCCCGAAAATGTTTACAGCAACTGATCAGCACGCTCGATTACTGCCACAGTAGAGGCGTGAGTCATCAGGATTTAAAACCAGAAAACTTGTTGTTGGATGAACATGGCAACTTAAAAGTTTTTGATTTTGGATTGAGTGCACTTGTAGATTCCAAGAGACAAGATGGATTGCTTCACATGACCTATGGAACTCCGGCTTATGTTGCTCCTGAAGTGATTAAAAGGAATGGTTATGACGGATCCAAAGTGGATATTTGGTCGTGCGGAGTGATTTTATATGTTTTCTTGGCTGGTTATCTACCTTTCCATGATTCTAATATAATTGAGTTGTATAGAAAGATTGAGAAGGGGGCAGTCGAGTACCTGAAATGGTTCACGATGGAAGTGCGACTATTGCTTTCAAAAATATTGGATCCATACCCGAATACGCAGATATCCATATCTGAAATCATGGAAAATTCTTGGTTCAGGAGGGATTAG | 621 | 41.55 | MGLVRHLNVVELYKVMASKTKIYFVMEYMKGGELVDKVAEGKLKEDIARKCLQQLISTLDYCHSRGVSHQDLKPENLLLDEHGNLKVFDFGLSALVDSKRQDGLLHMTYGTPAYVAPEVIKRNGYDGSKVDIWSCGVILYVFLAGYLPFHDSNIIELYRKIEKGAVEYLKWFTMEVRLLLSKILDPYPNTQISISEIMENSWFRRD | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 21088758 | 21089378 | + | Bda001990.1 | Bda01g00137 | 137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g00137 | 206 | SMART | serkin_6 | 1 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda01g00137 | 206 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 204 | IPR011009 | - | |
| Bda01g00137 | 206 | PANTHER | - | 1 | 205 | - | - | |
| Bda01g00137 | 206 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 206 | - | - | |
| Bda01g00137 | 206 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 67 | 79 | IPR008271 | GO:0004672|GO:0006468 | |
| Bda01g00137 | 206 | Pfam | Protein kinase domain | 4 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda01g00137 | 206 | ProSiteProfiles | Protein kinase domain profile. | 1 | 203 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Bda01g00137 | 206 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 | 1 | 205 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00137 | Bda-Chr1:21088758 | Bda14g01118 | Bda-Chr14:10175510 | 4.93E-121 | dispersed | |
| Bda01g00137 | Bda-Chr1:21088758 | Bda02g00137 | Bda-Chr2:19715219 | 1.15E-91 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 69413 | PF00069 | Pkinase | 4.30E-54 | CL0016 | Bda | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g00137 | K07198 | - | cit:102619997 | 330.102 |