Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00159 ATGCTGCGAGCAAGCATATCTCTCTCACCATTCGACTCAACTCACAAACTAGTTCGCATTGTTAGTCATCTCTTTTGCTCCTACCTCCTCCCTCCTCCGAAAATGGCGTCGTCTCAAAGAGAACCAAGGCTCTTAGAAAATGGCAATATCAAGGGTTTGAACAAAGAGATGAGACCGTACGGACGCACAGCCCATAACATGTCATCCTCCTCTCTGCGGAAAAAATCGGACTTGACCCTTGTTTCTAAAGTGAGGTTTGGTTGTCTCAGAAAGCTTCTGATTAATCTCCAGGAAGTTATTTTGGGGACCAAACTCTCTGTTCTTTTCCCTGCTATCCCTCTCGCTATTGCTGCTGAGGTTTATGGCTTTGGAAGACCATGGATTTTCGGGCTGAGCTTACTTGGACTTACACCGCTGGCAGAACGTGTTAGCTTTCTGACAGAACAAATTGCTTATTACACTGGCCCTACAGTGGGAGGACTATTGAATGCAACATGTGGAAATGCTACAGAGCTTATTATTGCAGTATTCGCGCTTTCCAAAAGGAAAATAGAAGTGGTGAAGTATTCTCTTCTGGGTTCCGTTCTTTCAAATCTTCTCCTTGTCCTTGGGACCTCTCTCTTTTGTGGCGGTCTTGCAAATCTTAAGAAAGAACAGAAATTTGACAGACGGCAAGGTGATGTGAACTCTCTGATGCTTCTGCTATCCCTACTGTGTCACTTGCTGCCTTTGCTTTTCACTCTTGCTGGAGCCTCAGCTGCTGTAACAACATTTCCAACTCTCGCATTGTCGAGAGCGAGCAGCATAATAATGCTTGTTGCCTACATTGCTTACATAATTTTCCAATTATGGACTCATCGCCAGCTATTTGAAGCACAGGACTCAGAAGACGATGATCAAGTAGCGGAAGAGCCACCGGTTATTGGATTTTGCAGCGGATTTGCATGGCTGGTCGGAATGACCCTTGTTATTACTTTGTTGTCTGAATACGTAGTGGCTACAATTGAGGATGCATCAGATTCGTGGGGTTTATCAGTTAGCTTCCTCAGCATAATTTTACTACCAATAGTTGGAAATGCAGCCGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTGGATATATCATTAGGTGTTGCTCTAGGATCCGCGACTCAAATTGCTCTATTTGTGATTCCACTGTGCGTGATTGTTGGTTGGATAATGGGAATCAACATGGACCTTAATTTCAACCTCCTTGAAACTGGCTCTCTTGGCTTATCAATAGTTGCTGCAGCATTCACTTTACAGGACGGCACTTCCCATTACATCAAAGGACTAGTTCTTCTTCTCTGCTACATTGTCATATCAGCTTGTTTCTTTGTATCCAACACACCTTTGAAGCAAGGAAATGCAATCAACATGGGATTTGAATCACCATTTCCTGGAGGCTTCAGAGCTTGA 1449 43.82 MLRASISLSPFDSTHKLVRIVSHLFCSYLLPPPKMASSQREPRLLENGNIKGLNKEMRPYGRTAHNMSSSSLRKKSDLTLVSKVRFGCLRKLLINLQEVILGTKLSVLFPAIPLAIAAEVYGFGRPWIFGLSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAVFALSKRKIEVVKYSLLGSVLSNLLLVLGTSLFCGGLANLKKEQKFDRRQGDVNSLMLLLSLLCHLLPLLFTLAGASAAVTTFPTLALSRASSIIMLVAYIAYIIFQLWTHRQLFEAQDSEDDDQVAEEPPVIGFCSGFAWLVGMTLVITLLSEYVVATIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVGWIMGINMDLNFNLLETGSLGLSIVAAAFTLQDGTSHYIKGLVLLLCYIVISACFFVSNTPLKQGNAINMGFESPFPGGFRA 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22864235 22866921 - Bda002043.1 Bda01g00159 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00159 482 TIGRFAM caca2: calcium/proton exchanger 92 456 - -
Bda01g00159 482 Gene3D - 305 457 IPR044880 -
Bda01g00159 482 Gene3D - 156 296 IPR044880 -
Bda01g00159 482 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 35 468 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bda01g00159 482 TIGRFAM cax: calcium/proton exchanger 110 456 IPR004798 GO:0006816|GO:0015369
Bda01g00159 482 Pfam Sodium/calcium exchanger protein 313 453 IPR004837 GO:0016021|GO:0055085
Bda01g00159 482 Pfam Sodium/calcium exchanger protein 127 284 IPR004837 GO:0016021|GO:0055085
Bda01g00159 482 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 35 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00159 Bda-Chr1:22864235 Bda13g00559 Bda-Chr13:6542330 1.52E-116 dispersed
Bda01g00159 Bda-Chr1:22864235 Bda06g00458 Bda-Chr6:6618326 1.28E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00159 K07300 - rcu:8267509 669.463