Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00163 GACAAGGAAAACTTGTGTCTTTATGGACACTCAAATGAAGCCTGGGAAGTAACTCTTCCTATAGAGGAGGTTCCACTCGAGCTTCCGGAGCCAGTACTTGGAATAAATTTTGTGAGAGATGGGGTGAATTGCAAAGACTGTATTTCGTTAGTTGTTGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTTTTTATCTTGGAGCCTATCTTAACATGGCCAAAAGGTCAATTATTATTCTGTTTATCTTGATCAATGATTTACCAACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATTAAAGAGAACCCCAATATTGACAGTGGAAGCAAATGTAGATCAAGCACAAAGAACTCGGCTTCTCTTATCTCATTACAAATCCTCACTAAAAGCAACCCAAAAGCTGCAGAAGAAAATTACGAAGATGAAGACGAACTCAACGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAAATGAGTTCTGTGAAAGGTGGTTCCACGGGAAGTACGTCAAGATAACACTCGCTAAGGCTGAGAGCATAAAGCAACACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 597 41.88 DKENLCLYGHSNEAWEVTLPIEEVPLELPEPVLGINFVRDGVNCKDCISLVVVHSDSWLLAVAFYLGAYLNMAKRSIIILFILINDLPTVFEVVTERKPIKENPNIDSGSKCRSSTKNSASLISLQILTKSNPKAAEENYEDEDELNETLCGSCGGNYSANEFCERWFHGKYVKITLAKAESIKQHKCPSCSMKKGRQ 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23147842 23154903 + Bda002049.1 Bda01g00163 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00163 198 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 1 198 - -
Bda01g00163 198 PANTHER CPG BINDING PROTEIN 1 198 IPR045104 GO:0006355|GO:0042393
Bda01g00163 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 192 IPR013083 -
Bda01g00163 198 SUPERFAMILY FYVE/PHD zinc finger 141 196 IPR011011 -
Bda01g00163 198 Pfam Alfin 1 95 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00163 Bda-Chr1:23147842 Bda15g00255 Bda-Chr15:5144962 9.09E-79 dispersed
Bda01g00163 Bda-Chr1:23147842 Bda03g00819 Bda-Chr3:6954682 6.10E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00163 - - gmx:100793126 273.478