Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00194 ATGCCCAATTCCATTACGAACAGGTCAAACAGGTTAGAGTCAGTGACGATGGCGGAAGAGTTGAAGCTGTTTGGAGCAACGGGAAGCCCATTCAGCCACAGAGTGGAGGTGGCTCTGAAACTGAAAGGCGTCGAATATGAATACGTCGAAGAAGACGTGTACGGAACCAAAAGCTCAGAGCTTCTGAAATACAATCCGGTTCACAAGAAGATTCCAGTGCTTCTGCACAACGGGAAGCCCTTGGCTGAATCCCTCGTCATTCTTGAGTACATCGACGACGCGTTCGGAGGTTATCCTCTCCTGCCAAAGGATCCGTACGACAAAGCCATGGCTCGATTCTGGGCCAAGTTCTTCGACGACAAGGTCCGTCCGAGCTTATGGAAAGCTTGCTGGAGTGTGGGGGAGGAGAGAGAAAAGGCGATGGAGGAGGCGAAGGAGGTTCTGAAAATCCTAGAAAACGAGCTGGGCGATAAGCGATTCTTCGGAGGAGAGGCCGTCGGATATGTCGACATTGCTGCCAACTCCTTAAGCTTTTGGTATGGGATTTTTCAAGAACTAGTCGGACTTGAATTGCTGACCACTAACGACTTCCCCAAGCTCTGCCGATGGCGGGAGGAGTTTGTTAGTCAGAGCTGTGTCAAAGAAACTCTGCCTCAGAAGGAAAGCTTACTCGCATTTCTGCAATCTCGCTTCGCCAAGAAGAAACTTGAATGCCCTTAA 720 50.14 MPNSITNRSNRLESVTMAEELKLFGATGSPFSHRVEVALKLKGVEYEYVEEDVYGTKSSELLKYNPVHKKIPVLLHNGKPLAESLVILEYIDDAFGGYPLLPKDPYDKAMARFWAKFFDDKVRPSLWKACWSVGEEREKAMEEAKEVLKILENELGDKRFFGGEAVGYVDIAANSLSFWYGIFQELVGLELLTTNDFPKLCRWREEFVSQSCVKETLPQKESLLAFLQSRFAKKKLECP 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24604886 24605672 - Bda002102.1 Bda01g00194 194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00194 239 Pfam Glutathione S-transferase, C-terminal domain 135 210 IPR004046 -
Bda01g00194 239 CDD GST_C_Tau 105 230 IPR045074 GO:0004364|GO:0006749
Bda01g00194 239 Coils Coil 134 154 - -
Bda01g00194 239 Gene3D - 101 237 - -
Bda01g00194 239 SUPERFAMILY Thioredoxin-like 21 122 IPR036249 -
Bda01g00194 239 Gene3D Glutaredoxin 15 100 - -
Bda01g00194 239 Pfam Glutathione S-transferase, N-terminal domain 20 92 IPR004045 -
Bda01g00194 239 SFLD Glutathione Transferase (cytosolic) 17 235 IPR040079 -
Bda01g00194 239 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 19 99 IPR004045 -
Bda01g00194 239 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 104 231 IPR010987 -
Bda01g00194 239 SFLD Main.3: Omega- and Tau-like 17 235 IPR045073 -
Bda01g00194 239 SUPERFAMILY GST C-terminal domain-like 93 232 IPR036282 -
Bda01g00194 239 CDD GST_N_Tau 21 95 - -
Bda01g00194 239 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 20 231 IPR045073 -
Bda01g00194 239 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 20 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00194 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100242547 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00194 Bda-Chr1:24604886 Bda05g00801 Bda-Chr5:56458421 3.40E-52 dispersed
Bda01g00187 Bda-Chr1:24382576 Bda01g00194 Bda-Chr1:24604886 6.91E-153 proximal
Bda08g00016 Bda-Chr8:151173 Bda01g00194 Bda-Chr1:24604886 6.51E-63 transposed
Bda14g00849 Bda-Chr14:6537819 Bda01g00194 Bda-Chr1:24604886 2.16E-49 transposed
Bda01g00194 Bda-Chr1:24604886 Bda03g00799 Bda-Chr3:6775962 5.51E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g817 . . Bda01g00194 . . . . . . . Cma03g00390 . . . . . . Bhi03g02065 Tan03g0879 . . . . . Cla04g00753 Cam04g0774 Cec04g0898 Cco04g0953 Clacu04g0812 Cmu04g0802 Cre04g0857 . . . . Lsi01g01487 Csa04g01557 Chy08g00695 . . . . . Bpe04g00756 . Bma01g01846 . . Cmo03g00404 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02465
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00604 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 2.7e-62 235.3
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.2e-62 236.5
Bda04g00604 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.8e-57 219.5
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.1e-59 225.7
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 5.5e-60 227.6
Bda04g00604 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.5 8.4e-66 247.3
Bda07g01101 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.0 3.2e-71 265.0
Bda07g01101 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 1.7e-72 269.2
Bda01g00194 . 19 232 Glutathione S-transferase Gene Family AT3G09270 58.6 3.0e-72 268.5
Bda01g00187 . 3 213 Glutathione S-transferase Gene Family AT3G09270 59.0 3.9e-72 268.1
Bda03g00799 . 200 410 Glutathione S-transferase Gene Family AT3G09270 58.0 6.3e-70 260.8
Bda05g00801 . 2 222 Glutathione S-transferase Gene Family AT1G78380 65.2 5.2e-85 310.8
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G78380 67.3 1.1e-84 309.7
Bda12g00804 . 1 209 Glutathione S-transferase Gene Family AT1G78380 66.5 2.0e-84 308.9
Bda12g00805 . 211 417 Glutathione S-transferase Gene Family AT1G78380 66.2 7.4e-84 307.0
Bda12g00806 . 1 231 Glutathione S-transferase Gene Family AT1G78380 59.7 3.8e-80 294.7
Bda12g00805 . 214 420 Glutathione S-transferase Gene Family AT1G78370 64.7 1.0e-80 296.6
Bda05g00801 . 2 220 Glutathione S-transferase Gene Family AT1G78370 62.1 3.2e-79 291.6
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G78370 62.6 2.1e-78 288.9
Bda12g00804 . 6 212 Glutathione S-transferase Gene Family AT1G78370 62.8 2.7e-78 288.5
Bda12g00806 . 1 231 Glutathione S-transferase Gene Family AT1G78370 56.7 4.8e-75 277.7
Bda12g00804 . 1 211 Glutathione S-transferase Gene Family AT1G78340 64.5 5.3e-82 300.8
Bda05g00801 . 2 222 Glutathione S-transferase Gene Family AT1G78340 61.5 1.7e-80 295.8
Bda12g00808 BCT 1 208 Glutathione S-transferase Gene Family AT1G78340 64.4 1.7e-80 295.8
Bda12g00805 . 211 419 Glutathione S-transferase Gene Family AT1G78340 62.7 2.5e-79 292.0
Bda12g00806 . 1 230 Glutathione S-transferase Gene Family AT1G78340 58.3 1.5e-76 282.7
Bda12g00804 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 3.6e-58 221.5
Bda12g00805 . 210 413 Glutathione S-transferase Gene Family AT1G78320 53.4 8.1e-58 220.3
Bda12g00808 BCT 1 212 Glutathione S-transferase Gene Family AT1G78320 50.9 3.1e-57 218.4
Bda05g00801 . 2 220 Glutathione S-transferase Gene Family AT1G78320 50.2 8.9e-57 216.9
Bda05g00801 . 2 225 Glutathione S-transferase Gene Family AT1G17180 63.4 1.4e-85 312.8
Bda12g00804 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.2 6.4e-83 303.9
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G17180 63.0 1.8e-82 302.4
Bda12g00805 . 1 214 Glutathione S-transferase Gene Family AT1G17180 61.7 3.2e-82 301.6
Bda12g00806 . 1 234 Glutathione S-transferase Gene Family AT1G17180 56.8 4.3e-79 291.2
Bda12g00804 . 2 215 Glutathione S-transferase Gene Family AT1G17190 58.3 1.6e-73 272.7
Bda12g00808 BCT 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 1.3e-72 269.6
Bda12g00805 . 210 417 Glutathione S-transferase Gene Family AT1G17190 56.3 2.9e-72 268.5
Bda05g00801 . 4 223 Glutathione S-transferase Gene Family AT1G17190 55.0 3.8e-72 268.1
Bda12g00806 . 3 230 Glutathione S-transferase Gene Family AT1G17190 51.3 5.2e-69 257.7
Bda12g00804 . 2 211 Glutathione S-transferase Gene Family AT3G43800 52.3 6.1e-65 244.2
Bda12g00805 . 209 419 Glutathione S-transferase Gene Family AT3G43800 50.7 2.6e-63 238.8
Bda12g00808 BCT 3 211 Glutathione S-transferase Gene Family AT3G43800 53.5 9.8e-63 236.9
Bda05g00801 . 4 220 Glutathione S-transferase Gene Family AT3G43800 50.2 2.7e-60 228.8
Bda05g00801 . 5 225 Glutathione S-transferase Gene Family AT1G53680 55.4 9.7e-71 263.5
Bda12g00805 . 209 419 Glutathione S-transferase Gene Family AT1G53680 58.2 2.8e-70 261.9
Bda12g00804 . 2 211 Glutathione S-transferase Gene Family AT1G53680 56.6 1.5e-68 256.1
Bda12g00808 BCT 4 205 Glutathione S-transferase Gene Family AT1G53680 60.8 2.6e-68 255.4
Bda12g00806 . 4 234 Glutathione S-transferase Gene Family AT1G53680 53.4 8.5e-67 250.4
Bda11g00278 . 16 154 Glutathione S-transferase Gene Family AT2G02380 51.8 1.4e-37 153.3
Bda08g00522 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.6 7.3e-96 347.1
Bda08g00522 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.8e-93 339.0
Bda15g00189 . 247 426 Glutathione S-transferase Gene Family AT5G02780 59.9 2.6e-58 222.2
Bda05g01248 . 2 142 Glutathione S-transferase Gene Family AT5G02780 58.7 4.9e-41 164.9
Bda15g00189 . 247 428 Glutathione S-transferase Gene Family AT3G55040 65.0 1.0e-64 243.8
Bda05g01248 . 1 147 Glutathione S-transferase Gene Family AT3G55040 56.8 7.2e-42 167.9
Bda15g00189 . 247 430 Glutathione S-transferase Gene Family AT5G02790 62.7 3.7e-65 245.0
Bda05g01248 . 1 143 Glutathione S-transferase Gene Family AT5G02790 57.6 2.2e-41 166.0
Bda15g00369 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.6 3.6e-83 304.7
Bda14g00316 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.5 2.3e-82 302.0
Bda01g01146 . 6 187 Glutathione S-transferase Gene Family AT1G19570 59.6 1.3e-61 233.0
Bda15g00369 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 1.7e-85 312.4
Bda14g00316 . 1 212 Glutathione S-transferase Gene Family AT1G75270 69.0 6.5e-85 310.5
Bda01g01146 . 6 187 Glutathione S-transferase Gene Family AT1G75270 59.6 1.2e-62 236.5
Bda01g01146 . 2 185 Glutathione S-transferase Gene Family AT5G16710 76.6 1.2e-85 313.2
Bda15g00369 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 1.2e-72 270.0
Bda14g00316 . 3 210 Glutathione S-transferase Gene Family AT5G16710 55.3 6.7e-68 254.2
Bda01g00677 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.9 3.3e-102 368.2
Bda06g00110 . 1 260 Glutathione S-transferase Gene Family AT1G77290 62.8 1.9e-94 342.4
Bda06g00111 . 1 260 Glutathione S-transferase Gene Family AT1G77290 62.8 1.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00194 Bda_Chr01 FPKM 2.172358 2.340877 2.54122 3.30388 0.244991 0.366609 0.533875 0.0 0.0