Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00226 ATGACCCATCTTCTACTCTGCTCTGTTTCTCTTGTGTTGCTACTGGCACTGGCCGATGCTAGAATCCCTGGACTTTACGCTGGCGGTCCTTGGGAGAGCGCACACGCTACCTTCTACGGTGGCAGCGACGCCTCCGGAACAATGGGCGGTGCTTGTGGGTATGGAAATCTGTATAGCCAAGGCTACGGAGTGAATACTGCCGCACTAAGCACCGCTCTGTTCAACAGCGGACTCAGTTGCGGTGCCTGCTTTGAGATAAAGTGCGCCGACGCCCCAAAATGGTGCCACCCCGGCAGCCCTTCCATCTTCATCACCGCAACCAATTTCTGCCCTCCAAACTTCGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCGCATTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGGATAGTCCCTGTTGCCTTCCGCCGGGTCCCATGCAGAAAGGCAGGAGGAATCAGGTTCACCATCAACGGCTTCCGTTACTTCAACTTGGTTCTGATCAGCAACGTCGCGGGTGCAGGCGATATCGTGCGCCTCAGCGTGAAGGGTACAAACACAGGGTGGATGAGCATGAGTCCGAAACTGGGGGCAAAACTGGCAATCCAACTCCCCCTTGGTGGGCCAGTCTCTTTCCTTTAG 675 56.89 MTHLLLCSVSLVLLLALADARIPGLYAGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCADAPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKAGGIRFTINGFRYFNLVLISNVAGAGDIVRLSVKGTNTGWMSMSPKLGAKLAIQLPLGGPVSFL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26088656 26089849 - Bda002155.1 Bda01g00226 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00226 224 PANTHER EXPANSIN 4 209 - -
Bda01g00226 224 Pfam Lytic transglycolase 66 152 IPR009009 -
Bda01g00226 224 Gene3D - 163 224 IPR036749 -
Bda01g00226 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 224 IPR007117 -
Bda01g00226 224 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Bda01g00226 224 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Bda01g00226 224 Pfam Expansin C-terminal domain 164 223 IPR007117 -
Bda01g00226 224 SMART dpbb_1 66 153 IPR007112 -
Bda01g00226 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Bda01g00226 224 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Bda01g00226 224 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bda01g00226 224 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bda01g00226 224 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bda01g00226 224 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Bda01g00226 224 SUPERFAMILY PHL pollen allergen 161 223 IPR036749 -
Bda01g00226 224 PANTHER EXPANSIN-A15 4 209 IPR002963 GO:0009664
Bda01g00226 224 Gene3D - 19 159 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00226 Bda-Chr1:26088656 Bda02g00824 Bda-Chr2:48835106 3.99E-129 dispersed
Bda01g00226 Bda-Chr1:26088656 Bda15g00228 Bda-Chr15:4971370 1.43E-123 wgd
Bda01g00226 Bda-Chr1:26088656 Bda03g00784 Bda-Chr3:6554733 1.24E-131 wgd
Bda01g00226 Bda-Chr1:26088656 Bda05g00964 Bda-Chr5:58134678 7.74E-134 wgd
Bda01g00226 Bda-Chr1:26088656 Bda09g01508 Bda-Chr9:46841799 2.58E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00226 - - jre:109006802 379.793