Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00276 ATGCCTAAAGATGTCGAATCCGGAGGATTCTCCGGGAAGGACTACCACGACCCACCTCCGACGCCTCTGATCGACCCCGAAGAGCTCACTCAGTGGTCTTTATACAGAGCTGTCATCGCGGAATTCATTGCCACTCTTTTGTTCCTCTACGTCACGGTACTGACGGTGATCGGATACAACGTCCAGACTGACATAACTCGCGGCGGCGATGATTGCGGCGGTGTTGGCATTCTCGGAATTGCTTGGGCCTTCGGCGGAATGATCTTTATCCTCGTTTACTGCACTGCTGGAATCTCCGGCGGCCATATTAATCCTGCTGTCACTTTCGGCCTGTTTCTAGCTCGCAAGGTCTCGTTAATCCGAGCTCTTCTGTACATGGTAGCTCAGTGCTTGGGAGCAATTTGTGGGTGTGGGCTCGTGAAGGCGTTTCAGAATGCTTACTATGAAGAATACCACGGCGGAGCTAACATGCTCGCCGCTGGTTACAACAAAGGCACTGGATTAGCAGCTGAAATCATCGGAACTTTCGTTCTTGTCTATACAGTCTTCTCTGCAACAGACCCCAAGAGAAACGCCAGAGATTCTCACGTTCCGGTCTTGGCGCCACTCCCGATTGGATTTGCGGTGTTTATGGTTCACCTAGCTACCATTCCCATCACCGGCACTGGAATCAACCCAGCTCGAAGCTTTGGGGCTGCAGTGATTTATAATAAAGATAAAGCCTGGGATGATCAATGGATATTCTGGGTCGGGCCATTTATTGGAGCCGCCATTGCAGCAATCTATCACCAGTATATTCTGAGAGCAGGGGCAGTGAAAGCTTTGGGCTCTTTCAGAAGCTCATACTGA 849 50.77 MPKDVESGGFSGKDYHDPPPTPLIDPEELTQWSLYRAVIAEFIATLLFLYVTVLTVIGYNVQTDITRGGDDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALLYMVAQCLGAICGCGLVKAFQNAYYEEYHGGANMLAAGYNKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKAWDDQWIFWVGPFIGAAIAAIYHQYILRAGAVKALGSFRSSY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27389525 27390532 + Bda002223.1 Bda01g00276 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00276 282 Gene3D Glycerol uptake facilitator protein. 21 282 IPR023271 -
Bda01g00276 282 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 -
Bda01g00276 282 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Bda01g00276 282 PANTHER AQUAPORIN PIP2-4-RELATED 7 281 - -
Bda01g00276 282 MobiDBLite consensus disorder prediction 1 21 - -
Bda01g00276 282 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00276 282 SUPERFAMILY Aquaporin-like 27 268 IPR023271 -
Bda01g00276 282 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00276 Bda-Chr1:27389525 Bda09g01459 Bda-Chr9:46436180 1.66E-168 dispersed
Bda13g01334 Bda-Chr13:35622513 Bda01g00276 Bda-Chr1:27389525 4.95E-33 dispersed
Bda14g00264 Bda-Chr14:1812855 Bda01g00276 Bda-Chr1:27389525 6.32E-113 dispersed
Bda15g01016 Bda-Chr15:18987039 Bda01g00276 Bda-Chr1:27389525 2.66E-121 dispersed
Bda01g00276 Bda-Chr1:27389525 Bda03g00743 Bda-Chr3:6309940 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00276 K09872 - jre:109020874 506.908