Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00291 ATGATCTTTATCCTCGTTTACTGCACTGCTGGAATCTCCGGCGGCCATATTAATCCTGCTGTCACTTTCGGCCTGTTTCTAGCTCGTAAGGTCTCGTTAATCCGAGCTCTTCTGTACATGGTAGCTCAGTGCTTGGGAGCAATTTGTGGGTGTGGGCTCGTGAAGGCGTTTCAGAATGCTTACTATGAAGAATACCACGGCGGAGCTAACATGCTCGCTGCTGGTTACAACAAAGGCACTGGATTAGCAGCTGAAATCATCGGAACTTTCGTTCTTGTCTATACAGTCTTCTCTGCAACAGACCCGAAGAGAAACGCCAGAGATTCTCACGTTCCGGTCTTGGCGCCACTCCCGATTGGATTTGCGGTGTTTATGGTTCACCTAGCTACCATTCCCATCACCGGCACTGGAATCAACCCAGCTCGAAGCTTTGGGGCTGCGGTGATTTATAATAAAGATAAAGCCTGGGATGATCAATGGATATTCTGGGTCGGGCCATTTATTGGAGCCGCCATTGCAGCAATCTATCACCAGTATATTCTGAGAGCAGGGGCAGTGAAAGCTTTGGGCTCTTTCAAAAGCTCATACTGA 591 48.56 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALLYMVAQCLGAICGCGLVKAFQNAYYEEYHGGANMLAAGYNKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKAWDDQWIFWVGPFIGAAIAAIYHQYILRAGAVKALGSFKSSY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27748217 27748956 - Bda002245.1 Bda01g00291 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00291 196 PANTHER AQUAPORIN PIP2-4-RELATED 1 195 - -
Bda01g00291 196 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 SUPERFAMILY Aquaporin-like 2 182 IPR023271 -
Bda01g00291 196 Gene3D Glycerol uptake facilitator protein. 1 196 IPR023271 -
Bda01g00291 196 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 195 IPR034294 -
Bda01g00291 196 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 TIGRFAM MIP: MIP family channel proteins 2 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00291 196 ProSitePatterns MIP family signature. 16 24 IPR022357 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00291 Bda03g00743 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00291 Bda-Chr1:27748217 Bda09g01459 Bda-Chr9:46436180 4.79E-126 dispersed
Bda05g01255 Bda-Chr5:60364200 Bda01g00291 Bda-Chr1:27748217 1.07E-09 dispersed
Bda01g00291 Bda-Chr1:27748217 Bda02g00760 Bda-Chr2:48365973 9.63E-125 wgd
Bda01g00291 Bda-Chr1:27748217 Bda03g00743 Bda-Chr3:6309940 1.17E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00291 K09872 - csv:101215300 372.474