Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00298 ATGGAGCACGTTAAGGTCGCCGAACATAAGAATGGATCTTCAAAGAACGGTTCACTGGGGAGCCTGTGCAAGAGCCGGGACCCGTTGAACTGGGGGGCTGCGGCGGAGGCTCTTAGTGGGAGCCACTTGGACGAGGTGAAGAGGATGGTTGCTGAGTATCGCCGGCCAGTGATAAATCTCGGAGGGGAAACTTTGACCATCGCGCAGGTGGCTGCCGTTGCCCGGCGGAGCTCGGAAGTATCAGTGGATCTATCGGAATCTGCTAGAGCCGGTGTGAAGGCGAGCAGTGACTGGGTGATGGATAGTATGAATAAAGGGACAGACAGTTACGGAGTTACTACTGGGTTTGGTGCAACTTCGCACAGAAGAACTAAAGAAGGTGGAGCTCTGCAGAAGGAACTAATTAGATTCTTGAACGCTGGAATATTCGGGAACGGGACGGAATCTTGCCACACTTTGCCGCACTCCGCCAGCAGAGCCGCCATGCTAGTAAGAATCAATACCCTCCTCCAAGGATACTCTGGCATCAGATTCGAGATCCTGGAAGCTATAACGAAGCTTCTCAACAGCAACGTCACCCCGTGTTTGCCACTTCGCGGTACCATTACGGCCTCCGGCGACCTCGTTCCTCTCTCCTACATTGCCGGACTACTCACTGGAAGACCCAACTCCAAAGCCGTCGGCCCCGACGGGAAATCACTCACTGCTACGGAGGCGTTTGAAATCGCCGGGATTAAATCCGGATTTTTCGAGCTGCAGCCGAAGGAAGGGCTGGCCCTGGTCAACGGCACCGCCGTCGGATCTGGGTTGGCTTCGGTGGTGCTTTTTGAGGCAAATATTCTCGCTGTGTTGTCGGAGATTCTCTCCGCGGTCTTCGCCGAGGTGATGCAGGGGAAGCCGGAGTTTACAGACCATTTGACCCATAAATTGAAGCACCATCCTGGTCAAATTGAAGCTGCCGCAATAATGGAGCACATTTTGGACGGAAGTTCTTACATTAAAGCTGCCAAAAAACTCCACGAAACTGATCCTTTGCAGAAACCAAAACAAGATCGGTACGCTCTTAGAACTTCGCCCCAATGGCTCGGCCCGCTAATTGAAGTGATCCGATACCCCTGCAGTGCAAATTACCCATTGATGCAAAAGCTAAGACAAGTTCTCGTGGAGCACGCCCTCACCAACGGAGAAGGCGAGAAGAACGTACCACTTCGATCTTTCATTTTTAAGACGGCAGAAGTGCCAATCGAATGGGAAGAACACTATGTTGGGAAAGAAATAGATCCCAGAACTCAGAGTTTTCTAACGTGGGAAAGCTTAGAATCAGTTCGGCGAAATAGAGTCGGTTTGAAGGGGCCAATGGCAACCCCGATTGGAAAAGGACATCGTTCTTTAAACCTTACCTTAAGAAAAGAGCTTAATTTGTATGCCAATGTTAGGCCTTGTCAAAGCTTACCTGGCTACAAAACTAGGTATGATGATGTGAATCTTATCACGATTCGTGAAAACACGGAAGGGGAGTACAGTGGTCTAGAGCATCAAGTGGTTAGAGGTGTTGTTGAAAGCATCAAGATCATTACCCGTCAAGCAAGTTTGAGGGTAGCTGAATATGCATTTCACTATGCCAAGCTCCATGGGAGAGAGAGAGTTTCTGCAATTCATAAAGCCAACATCATGCAGAAAACTGATGGTCTTTTTCTCAAGTGTTGCCGTGAGGTTGCAGAGAAGTACCCTGAGATAAAGTACGAGGAAGTTGTAATTGATAATTGCTGTATGATGCTTGTAAAGAATCCAGCACTCTTTGATGTGTTGGTGATGCCTAATCTCTACGGTGACATTATCAGTGACCTTTGTGCTGGGTTGGTTGGGGGTTTGGGCCTAACACCAAGCTGCAATATTGGTGAGGGTGGGATTGCCCTTGCAGAAGCTGTTCATGGTTCAGCCCCTGATATTGCTGGAAAGAATATGGCAAACCCGACAGCTTTATTATTGAGTGCCGTCACAATGTTACACCATTTGGATCTCCACGCAAAAGCCGATCAGATCCAAGATGCCATCCTCAACACCATTGCTGAAGGGAAGTATCGGACGGCTGACCTTGGCGGCTCGTCCTCAACCACTGATTTTACAAAGGCAATTTGTGATCATCTTTAA 2151 49.09 MEHVKVAEHKNGSSKNGSLGSLCKSRDPLNWGAAAEALSGSHLDEVKRMVAEYRRPVINLGGETLTIAQVAAVARRSSEVSVDLSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTESCHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPDGKSLTATEAFEIAGIKSGFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEILSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRYPCSANYPLMQKLRQVLVEHALTNGEGEKNVPLRSFIFKTAEVPIEWEEHYVGKEIDPRTQSFLTWESLESVRRNRVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCQSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESIKIITRQASLRVAEYAFHYAKLHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNMANPTALLLSAVTMLHHLDLHAKADQIQDAILNTIAEGKYRTADLGGSSSTTDFTKAICDHL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27905124 27911483 + Bda002255.1 Bda01g00298 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00298 716 CDD PAL-HAL 63 371 IPR001106 -
Bda01g00298 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Bda01g00298 716 Gene3D - 20 264 IPR024083 -
Bda01g00298 716 Gene3D Isopropylmalate Dehydrogenase 395 716 - -
Bda01g00298 716 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 405 716 - -
Bda01g00298 716 Pfam Aromatic amino acid lyase 65 371 IPR001106 -
Bda01g00298 716 SMART Iso_dh_2 407 712 IPR024084 -
Bda01g00298 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 27 370 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bda01g00298 716 Pfam Isocitrate/isopropylmalate dehydrogenase 411 712 IPR024084 -
Bda01g00298 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 372 410 - -
Bda01g00298 716 SUPERFAMILY L-aspartase-like 27 371 IPR008948 GO:0003824
Bda01g00298 716 PANTHER HISTIDINE AMMONIA-LYASE 372 410 IPR001106 -
Bda01g00298 716 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 607 626 IPR019818 GO:0000287|GO:0016616|GO:0051287
Bda01g00298 716 Gene3D Fumarase/aspartase (Central domain) 265 370 - -
Bda01g00298 716 PANTHER HISTIDINE AMMONIA-LYASE 23 371 IPR001106 -
Bda01g00298 716 MobiDBLite consensus disorder prediction 1 21 - -
Bda01g00298 716 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 406 716 IPR004434 GO:0006099
Bda01g00298 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 23 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00298 Bda-Chr1:27905124 Bda03g00739 Bda-Chr3:6273362 8.03E-11 dispersed
Bda13g01008 Bda-Chr13:11813514 Bda01g00298 Bda-Chr1:27905124 3.20E-39 dispersed
Bda01g00298 Bda-Chr1:27905124 Bda01g00300 Bda-Chr1:27933815 3.73E-12 proximal
Bda01g00298 Bda-Chr1:27905124 Bda01g00301 Bda-Chr1:27937611 0 proximal
Bda01g00298 Bda-Chr1:27905124 Bda15g00163 Bda-Chr15:4189266 6.79E-06 wgd
Bda01g00298 Bda-Chr1:27905124 Bda03g00738 Bda-Chr3:6264599 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00298 K10775 - rcu:8284514 627.861