Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00315 ATGCCTTTCCACAATTTCGCATTCGGCACGCAGGAGGAGTTCGTCCGACCGCAGCTATGGAAGTGCGGCGTGGCGGAGTTTATTTCCACGCTGATCTTCGTCTTTGCCGGCCAGGGATCAGGAATGGCATTTGCCAAGATATCGAATAATGGCGCCACCACTGAAGCCTCAATAATCGCCGCCTCTCTCGCCCACGGTTTCGGTCTCTTCATTGGCGTCGCCGTCAGCTTTAACATTTCCGGTGGGCATGTTAATCCTGCAGTCACCTTTGGTGCATTCGTGGGCGGAAACATTACTCTCCTCCGCCTCATTGTTTACTGGATCGGTCAGCTTCTCGGCTCTGTCGCTGCATGTGGTCTTCTTAAATTCACCACCCACGGCATGGTTACGACACCCTTTTTGTTCGCCTCTGATATTACAGTCTGGAACGCATTCGTTTTCGAGATCGTCATGACTTTCGGTCTGGTCTATACAGTCTATGCCACAGCAATTGATCCAAACAAAGGAACTTTAAAGACGATTGCGCCTATCGCTATCGGCTTAGTCGTTGGCGCTAATGTTCTGGCCGGTGGAGCCTTTGAGGGGGCGTCGATGAACCCGGCCGTCTCATTTGGACCCGCTTTGGTGAGCTGGAGTTGGGACCACCAGTGGGTCTACTGGGCCGGACCCCTCATCGGCGGCGGCATCGCCGGCCTTGTTTTCGAGGGTTTTTTTATCAAGCAGACCCACGACCCTCTACCTCAGGAATTCTGA 753 53.52 MPFHNFAFGTQEEFVRPQLWKCGVAEFISTLIFVFAGQGSGMAFAKISNNGATTEASIIAASLAHGFGLFIGVAVSFNISGGHVNPAVTFGAFVGGNITLLRLIVYWIGQLLGSVAACGLLKFTTHGMVTTPFLFASDITVWNAFVFEIVMTFGLVYTVYATAIDPNKGTLKTIAPIAIGLVVGANVLAGGAFEGASMNPAVSFGPALVSWSWDHQWVYWAGPLIGGGIAGLVFEGFFIKQTHDPLPQEF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28262176 28263082 - Bda002279.1 Bda01g00315 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00315 250 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Bda01g00315 250 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Bda01g00315 250 PANTHER AQUAPORIN TIP1-1 1 248 - -
Bda01g00315 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 CDD MIP 24 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda01g00315 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Bda01g00315 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00315 Bda-Chr1:28262176 Bda07g00601 Bda-Chr7:7353841 5.83E-121 dispersed
Bda03g00723 Bda-Chr3:6106560 Bda01g00315 Bda-Chr1:28262176 5.66E-161 transposed
Bda01g00315 Bda-Chr1:28262176 Bda05g01212 Bda-Chr5:60068461 8.16E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00315 K09873 - ncol:116253503 356.295