Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00338 ATGGGGATTCCTCAGGCGATGGAAATCCTGAGCGAAAGAGCAGCTTTTATTAGAGACTCGCTGCAAAAGAGCCAAACTATCACCAATAACATGGTCGACATTCTTGGCTCCTTTGACCACCGCCTCTCCGCCCTTGAAACCGCCATGCGTCCCACTCAGATAAGAACGCACTCAATCAGGAAGGCTCATGAGAATATTGATAAAACGGTCAAGGCTGCAGAGGTTATATTAGCGCAGTTCGACTTGTCTCGGAAGGCAGAGGCTAAAATATTAAGAGGGCCGCATGAGGATCTTGAAAGTTACTTGGAAGCCATTGACCAACTGAGAAGCATTATTCGCTTTTTTGGTGGCAATAAAAATTTTAAGAGTAGTGATTCAGTGCTTAACCACACAAACAACTTGCTTGCAAAAGCTATTTCTAAGCTTGAAGATGAATTCAGGCAGCTTCTGACGAACTACAGTAAGCCTGTTGAACCTGATCGTCTATTTGATTGCCTTCCCAACTCTCTACGTCCATCATCAGAAACATCGGGGCATCAAAGCAATGCTACTAGCAAGGGTAGTTCTATGCACCAAAGTAAAAGATTGGAAACTGCTGTGTATACACCCCTGTCATTAATTCCTAATAGAGTTGTGCCGCTATTGCATGACTTAGCCCAGCAAATGGTTCAGGCTGGCCATCAACAACAGCTGCTGAGGATATACAGGGATACTCGTGCTTCGGTTTTGGAACAGAGTCTCAGAAAACTAGGCGTGGAGAGGCTTAGTAAAGACGATGTCCAGAAAATGCAGTGGGAGGCTTTAGAGGCTAAGATTGGGAATTGGATTCATCACATGCGTATTGCGGTCAAGCTGTTGTTGTCAGGGGAAAGGAAAATATGCGATCAAATATTTGAGGGTGTTGATTCTCTCAGGGATCAATGCTTTGCGGAAGTGACTGCAAACAGTGTGGCTGTGTTGCTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCGCCAGAAAAACTATTTGTTCTCTTAGACATGTATGAGATAATGAGGGAACTACAATCAGAGATTGAAACACTGTTTGGCAACAAAGCAAGCCATGAAATGAGGGAAGCTGCATTGAGTTTGACAAAACGTCTCGCTCAGACAGCCCAGGAAACTTTCGCTGACTTTGAAGAAGCAGTAGAAAAGGATGCAACAAAAACTGCTATTCTTGATGGAACTGTCCATCCCTTGACCAGCTATGTGATAAATTATGTGAAATTTTTATTCGATTATCAGTCCACTTTGAAGCTACTTTTTGAAGACTTTGATAATAGTGATCCAGATGTTCAGTTAGCAAAGGTAACTACAAGGATTATGCTTGGTCTTCTTAATAATCTGGATGCGAAATCTAAGCAGTATAAAGACCAGGCATTGACTCAATTATTTCTCATGAACAACATTCACTATATAGTGAGATCTGTGAGAAGGTTTGTTATTGTATTGTGCTTGCTCCATTTGAAAGAAAAGACCTTACCTGCTTCGATATTTACCGTTTTAATGTTGTACAGGTCAGAGGCAAAGGATGTGTTGGGAGATGATTGGGTACAAATACACCGAAGAATTGTCCAACAACATGCTAATCAGTACAAGAGAGTTTCCTGGGCAAAGATTTTGCAGTGCCTCACTATTCAGGGCCTAAATCAGTCGGGCGGAGGCGATGCGGGCAGCAGTGGACTTTCAAGAGCAATGGTGAAAGAAAGGTTCAAGACATTTAATATTCAATTTGAAGAGCTTCATCAAAGACAGTCTCAGTGGACAGTTCCCGATAGCGAGTTGCGCGAATCGTTGAGGCTGGCCGTCGCTGAAGTCCTCTTGCCTGCATACAGATCTTTCGTCAAACGTTTCGGGCCAATGATAGAGAATGGGAAGAATCCTCAGAAATACATCAGATACACTCCTGAGAATCTTGAACGGATGTTGAATGACTTTTTTGAGGGTAAAACATTTGGTGAACAGAAACGG 1998 42.79 MGIPQAMEILSERAAFIRDSLQKSQTITNNMVDILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDKTVKAAEVILAQFDLSRKAEAKILRGPHEDLESYLEAIDQLRSIIRFFGGNKNFKSSDSVLNHTNNLLAKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSETSGHQSNATSKGSSMHQSKRLETAVYTPLSLIPNRVVPLLHDLAQQMVQAGHQQQLLRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHHMRIAVKLLLSGERKICDQIFEGVDSLRDQCFAEVTANSVAVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGNKASHEMREAALSLTKRLAQTAQETFADFEEAVEKDATKTAILDGTVHPLTSYVINYVKFLFDYQSTLKLLFEDFDNSDPDVQLAKVTTRIMLGLLNNLDAKSKQYKDQALTQLFLMNNIHYIVRSVRRFVIVLCLLHLKEKTLPASIFTVLMLYRSEAKDVLGDDWVQIHRRIVQQHANQYKRVSWAKILQCLTIQGLNQSGGGDAGSSGLSRAMVKERFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGPMIENGKNPQKYIRYTPENLERMLNDFFEGKTFGEQKR 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28985615 28990765 - Bda032891 Bda01g00338 338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00338 666 MobiDBLite consensus disorder prediction 169 194 - -
Bda01g00338 666 Coils Coil 347 367 - -
Bda01g00338 666 Gene3D Exocyst complex component Exo70 74 497 - -
Bda01g00338 666 Coils Coil 132 152 - -
Bda01g00338 666 SUPERFAMILY Cullin repeat-like 76 657 IPR016159 -
Bda01g00338 666 Pfam Exo70 exocyst complex subunit 274 654 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bda01g00338 666 MobiDBLite consensus disorder prediction 164 194 - -
Bda01g00338 666 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 36 488 - -
Bda01g00338 666 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 512 663 - -
Bda01g00338 666 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 488 IPR004140 GO:0000145|GO:0006887
Bda01g00338 666 PANTHER EXOCYST COMPLEX PROTEIN EXO70 512 663 IPR004140 GO:0000145|GO:0006887
Bda01g00338 666 Gene3D Exocyst complex component Exo70 507 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00338 K07195 EXOC7, EXO70; exocyst complex component 7 - mnt:21385810 1050.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00338 Bda-Chr1:28985615 Bda15g00126 Bda-Chr15:3666648 0 dispersed
Bda01g01624 Bda-Chr1:52131909 Bda01g00338 Bda-Chr1:28985615 4.60E-24 transposed
Bda01g00338 Bda-Chr1:28985615 Bda01g00434 Bda-Chr1:31203404 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00126 . 10 648 EXO70 exocyst subunit family AT5G03540 76.1 2.1e-278 954.9
Bda01g00434 . 1 640 EXO70 exocyst subunit family AT5G03540 71.4 2.9e-264 907.9
Bda01g00338 . 1 666 EXO70 exocyst subunit family AT5G03540 69.0 1.5e-260 895.6
Bda01g00434 . 1 640 EXO70 exocyst subunit family AT5G52340 78.4 4.5e-291 996.9
Bda01g00338 . 1 666 EXO70 exocyst subunit family AT5G52340 75.4 5.1e-287 983.4
Bda15g00126 . 12 648 EXO70 exocyst subunit family AT5G52340 73.3 6.3e-269 923.3
Bda01g00434 . 145 633 EXO70 exocyst subunit family AT5G52350 62.0 3.1e-169 592.0
Bda01g00338 . 145 659 EXO70 exocyst subunit family AT5G52350 59.3 2.7e-165 578.9
Bda15g00126 . 147 650 EXO70 exocyst subunit family AT5G52350 58.9 1.4e-161 566.6
Bda02g00882 . 8 637 EXO70 exocyst subunit family AT5G58430 65.6 8.8e-247 849.7
Bda02g00882 . 8 636 EXO70 exocyst subunit family AT1G07000 50.7 9.5e-174 607.1
Bda04g00941 BCT 8 607 EXO70 exocyst subunit family AT1G72470 62.7 3.9e-210 728.0
Bda10g00882 BCT 1 581 EXO70 exocyst subunit family AT1G72470 63.4 4.9e-205 711.1
Bda10g00882 BCT 1 579 EXO70 exocyst subunit family AT1G54090 62.4 9.8e-206 713.4
Bda04g00941 BCT 9 605 EXO70 exocyst subunit family AT1G54090 60.2 9.8e-206 713.4
Bda10g00882 BCT 1 580 EXO70 exocyst subunit family AT3G14090 63.7 1.3e-213 739.6
Bda04g00941 BCT 2 606 EXO70 exocyst subunit family AT3G14090 61.7 3.1e-212 734.9
Bda11g01602 BCT 13 647 EXO70 exocyst subunit family AT5G50380 60.5 2.8e-222 768.5
Bda14g01366 BCT 13 650 EXO70 exocyst subunit family AT5G50380 61.2 8.2e-222 766.9
Bda15g00670 CCT,ECH 13 649 EXO70 exocyst subunit family AT5G50380 57.3 1.2e-201 699.9
Bda06g00731 . 13 639 EXO70 exocyst subunit family AT5G50380 56.2 6.1e-201 697.6
Bda03g00036 BCT 15 683 EXO70 exocyst subunit family AT4G31540 70.6 2.4e-282 968.0
Bda01g00674 BCT 6 674 EXO70 exocyst subunit family AT4G31540 69.0 1.4e-277 952.2
Bda15g00194 . 40 632 EXO70 exocyst subunit family AT3G55150 51.2 3.6e-163 572.0
Bda14g00320 . 42 630 EXO70 exocyst subunit family AT3G55150 50.6 7.0e-159 557.8
Bda07g00609 CCT 35 594 EXO70 exocyst subunit family AT3G55150 50.5 1.5e-156 550.1
Bda02g00802 BCT,CCT 1 538 EXO70 exocyst subunit family AT3G55150 51.2 1.2e-145 513.8
Bda09g01492 BCT,CCT 1 514 EXO70 exocyst subunit family AT3G55150 50.9 2.9e-136 482.6
Bda14g00320 . 42 630 EXO70 exocyst subunit family AT2G39380 52.0 1.1e-164 577.0
Bda15g00194 . 33 632 EXO70 exocyst subunit family AT2G39380 52.0 1.6e-163 573.2
Bda05g00983 . 37 604 EXO70 exocyst subunit family AT3G09530 50.5 4.4e-145 511.9
Bda05g00983 . 1 597 EXO70 exocyst subunit family AT3G09520 55.2 1.6e-176 616.3
Bda02g00802 BCT,CCT 1 548 EXO70 exocyst subunit family AT3G09520 52.2 1.1e-153 540.4
Bda09g01492 BCT,CCT 1 523 EXO70 exocyst subunit family AT3G09520 50.1 1.0e-138 490.7
Bda02g00802 BCT,CCT 6 544 EXO70 exocyst subunit family AT5G59730 56.5 1.2e-166 583.6
Bda07g00609 CCT 26 602 EXO70 exocyst subunit family AT5G59730 50.7 9.7e-161 563.9
Bda09g01492 BCT,CCT 1 521 EXO70 exocyst subunit family AT5G59730 53.2 5.2e-146 515.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00338 Bda_Chr01 FPKM 11.309941 11.748258 11.193163 12.85601 11.608109 13.191787 12.68245 14.638176 15.860576