Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00373 ATGCTTCACATACTCACCTTCTTCTTCCTCCTGTTTCTCAGAAGCTTTTCTCAGAAAACTTGCCCTAATTGTGGCTCCATTGAAGTGCCTTATCCTCTCAGGACTGCTTCTAACTGCGGCGACTCAGATTATTCTCTCCGGTGCGATCATATTTCGAAGAAGCTTTACCTTGATTCTCTTCATGGAAGTTCTTATCTTATTCTCAGAATCACGCCTTCGTCTCAAACCATGGTGGTCAAGCCGTCGCCATGGCTTCCGACGACTTGTGTTACTCAAGACATGACGATAAGCGAGGGTCTTTGGCTAAACCAGTCGCTCCCTTTCAACATAACTTCGTCCAACACTATCTTCCTCTTCAATTGCTCTCCTCGCCTCTTAGTCTCGCCTCTGAACTGTACTCCTTCGAGTATCTGTCACGTTTACCTGCAGAGCTCTGGACGTGTCGACTCCGCTCGGGCTGCTCAGTGCAGTACTGGTCTCGTCCCGTGTTGTACTTTCCGAGCAGGCGGTATGCCTTCGGCTTATAAGATCAGACTCCATAGCTCGGGATGTAGAGCTTTTAGAAGCATTCTTCATTTGGATGTTGAAAAGCCTGCAAATCAATGGGAAGAAGGGTTGGAAATTCAGTGGAAACCTCCCTCTGAACCGCTTTGTACATCACAACTCGACTGCCTCGGAGCTTCCCGATGTTCGGTCTCTGATGCAGACGGCCTCCACCGATGCCTCTGCAACGAGAACTATTGTTGGGATCATCTTCTCGGCATCTGCGTGAGAAATAAGAAAAACAAAAATTCAAAACTTGGCTTGAAAGTCTCCATATTAATGATCTCCTTCGTCTCTCTATGTCTGGCTATGTCGATAATTACAGTTAAAAAGTGTCGAACAATCTCGGACAGGGCAAAACTTGCCAAGGTAAGGGAAGACTTGCTAAAGCTAAGCAATGGCGGAAAGCCCGCGAAGCTGTTCAGCTTCAAAGAGGTAAAGAAGGCGACAAACGGATTTTCGAAAAACCGAGTTTTGGGAAGTGGCGGTTTTGGGGAAGTTTACAAAGGAGAACTTCAAGATGGGACGGTGGTGGCTGTGAAATCAGCCAAAATTGGCAGCATAAAGAGCACAAAACAAGTACTAAACGAGGTTGGAATTCTGTCCCAAGTCAATCATAAAAACCTCGTAAGACTTCTCGGGTGTTGCATAGAATCTGATCAGCCATTGATGATCTACGAGTTCGTTTCTAACGGAACTCTGCACGATCATTTACACGGGAAGTTCTCAACTTTCTTAGATTGGAAAACCAGGCTCAAAATTGCTCTACAAATAGCTGAAGCATTGGCTTATCTACATTCAGCTGCATACCCTCCAATCTATCATAGAGATGTCAAATCCGCAAATATATTATTAGATAACAATTTCAATGCGAAAGTTTCCGATTTCGGGCTCTCCCGGCTGGTTAGCCCCGGTTCGAGCCACGTTTCGACTTGTGCTCAAGGAACATTAGGCTACTTGGATCCCGAATACTATAGAACTTATAAGCTAACCAATAAGAGCGATGTTTATAGTTATGGGGTCGTCTTGCTCGAGCTTCTAACTTCTCAGAAATCGATTGATTTTTCAAGAGATGAAGAAGATATCAATTTAGCCATTTATGTGAGCCAAAGGGTCAGCAAAAATGACAGAATCGTAGAAGTTGTGGATCAGAGATTGCTCGGAAATGACCCGTCTTGCGAATTACCGAGCAGTGTGAAGCTGTTGTTGGAGCTTGCACTTGCCTGTTTGAGAGAGAAGAGGGAAGAAAGGCCATGTATGAAGGATGTCGTTCAAGAGCTTGAATGTCTCATACATGTTTCAAATCATCAAGCAAAGCCCACTGAGATCAGTCAAGAAAGTATCCATTTAAAATGA 1899 44.6 MLHILTFFFLLFLRSFSQKTCPNCGSIEVPYPLRTASNCGDSDYSLRCDHISKKLYLDSLHGSSYLILRITPSSQTMVVKPSPWLPTTCVTQDMTISEGLWLNQSLPFNITSSNTIFLFNCSPRLLVSPLNCTPSSICHVYLQSSGRVDSARAAQCSTGLVPCCTFRAGGMPSAYKIRLHSSGCRAFRSILHLDVEKPANQWEEGLEIQWKPPSEPLCTSQLDCLGASRCSVSDADGLHRCLCNENYCWDHLLGICVRNKKNKNSKLGLKVSILMISFVSLCLAMSIITVKKCRTISDRAKLAKVREDLLKLSNGGKPAKLFSFKEVKKATNGFSKNRVLGSGGFGEVYKGELQDGTVVAVKSAKIGSIKSTKQVLNEVGILSQVNHKNLVRLLGCCIESDQPLMIYEFVSNGTLHDHLHGKFSTFLDWKTRLKIALQIAEALAYLHSAAYPPIYHRDVKSANILLDNNFNAKVSDFGLSRLVSPGSSHVSTCAQGTLGYLDPEYYRTYKLTNKSDVYSYGVVLLELLTSQKSIDFSRDEEDINLAIYVSQRVSKNDRIVEVVDQRLLGNDPSCELPSSVKLLLELALACLREKREERPCMKDVVQELECLIHVSNHQAKPTEISQESIHLK 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29593819 29595717 - Bda002351.1 Bda01g00373 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00373 632 SMART serkin_6 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00373 632 Pfam Wall-associated receptor kinase galacturonan-binding 21 79 IPR025287 GO:0030247
Bda01g00373 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Bda01g00373 632 SUPERFAMILY Protein kinase-like (PK-like) 317 609 IPR011009 -
Bda01g00373 632 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 14 620 - -
Bda01g00373 632 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Bda01g00373 632 Gene3D Transferase(Phosphotransferase) domain 1 410 630 - -
Bda01g00373 632 Pfam Protein tyrosine and serine/threonine kinase 336 608 IPR001245 GO:0004672|GO:0006468
Bda01g00373 632 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00373 632 CDD STKc_IRAK 340 609 - -
Bda01g00373 632 Gene3D Phosphorylase Kinase; domain 1 315 409 - -
Bda01g00373 632 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 620 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00373 Bda-Chr1:29593819 Bda04g00307 Bda-Chr4:46531151 1.47E-91 dispersed
Bda01g00373 Bda-Chr1:29593819 Bda15g00339 Bda-Chr15:6253955 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69416 PF07714 PK_Tyr_Ser-Thr 6.50E-51 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00373 - - tcc:18598110 910.598