Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00374 ATGGAGGGCCTAGTGTTTAACCCTGCACATTCTCATCTATTCCGACCGAAAACTCTCGTTTCGGCCCCTCTTTCGTCCTTCATTGGGACTCGAATTGTGTCCACTCCCGCCACCGTGAACAATGCCAGCACTAAACCGTTTATCGTTGCTACTCTTTCCAAATCTACGGCTGAGATCTCTGAGAAGCCTGCGTCGACCACCAGCTTCGCTGCAAGGGAAGACACGGTGGCGGCTGCGCCTCCTTCAACCCCGAGGAAAAAAGTATCGTCGGAATCTTTGCAATACGCTGCTGGTTACCTCGGGGCGGTGCCGGACCGTTTGGTTCAAGATAAAGGTGATAATTACGTCAATGCCATGGGGTACTTGACTAATATTCTATGTTCGAAGGTATACGATGTTGCTATTGAATCACCGTTGCAGCTCGCCACGAAGCTCTCGGAACGCTTAGGGGTGGAGGTTTGGCTCAAGCGGGAGGATTTGCAGCCTGTGTTTTCGTTTAAGCTTCGTGGAGCTTATAATATGATGGCAAAGCTTCGAAAAGAAAAGTTAGAAAAAGGGGTAATTTGTTCATCTGCTGGAAATCATGCTCAAGGGGTGGCATTAGCTGCCAAGAGACTAGGTTGTGATGCCGTGATTGCTATGCCAATAACTACTCCGGATATCAAATGGAAATCAGTGGAAAAGTTGGGTGCCACTGTTGTTCTTGTCGGAGATTCATATGACGAAGCGCAAAGCTATGCTAAAAAGCGAGGAGAAGAGGAAGGTCGAACATTCATACCTCCTTTCGATCACCCAGATATCATCATGGGGCAAGGAACAGTTGGGATGGAAATTGTGCGGCAAATGAAGGGCCCTTTGCATGCAATATTTGTGCCCGTTGGGGGAGGTGGACTTATAGCTGGAATTGCAGCATATATGAAGAGAGTTTCTCCTGAGGTTAAGATTATTGGTGTGGAGCCATGTGATGCAAATGCTATGGCGTTGTCTCTACATCATGGTCAGAGAGTGATTTTGGATCAGGTTGGAGGTTTTGCAGATGGTGTTGCAGTTAAGGAGGTCGGAGAAGAACCATTTCGCTTGTGCAGAGAACTGGTGGACGGTGTAGTTCTTGTAGGCAGGGATGCTATCTGTGCCTCAATAAAGGACATGTTCGAAGAGAAGAGGAGCATCTTAGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCTGAAGCCTACTGTAAATATTATGGCTTGAAGGGAGCAAGTGTAGTTGCCATAACCAGTGGTGCAAATATGAACTTTGATAAACTTAGGTTGGTGACTGAACTGGCTAACGTCGGTCGTCAACAGGAGGCTGTGCTTGCAACCATTATGCCAGAGAAGCCTGGGAGCTTCAAACAATTTTGTGAACTGGTGGGACCCATGAATATTACTGAATTCAAATATAGGTGTAATTCCGACAAAGAGGCTGTTGTTCTTTACAGTGTTGGCATCCATACAGTTTCTGAACTTGAAGCAATGAAAAATAGGATGGAATCTTCTCAACTTAAAACTTTTAATCTCACACAAAGTGACTTGGTTAAAGATCATTTACGTTACCTGATGGGAGGCAGGTCAACTGTTCAAAATGAGGTGCTTTGTAGATTTATCTTCCCAGAGAGACCTGGCGCTCTGATGAAATTTTTGGACGCATTCAGTCCTCGTTGGAATATTAGTTTATTCCATTACCGTGGACAGGGTGAAACTGGTGCAAATGTACTAGTCGGAATTCAAGTTGCAAAGACCGAGGCAGATGAATTCCACCTTCGTGCCTACAATCTTGGATACGATTATGCAATTGTAAGCGACTATGAAGAATTCCAGCTTTTGATGAATTGA 1857 45.56 MEGLVFNPAHSHLFRPKTLVSAPLSSFIGTRIVSTPATVNNASTKPFIVATLSKSTAEISEKPASTTSFAAREDTVAAAPPSTPRKKVSSESLQYAAGYLGAVPDRLVQDKGDNYVNAMGYLTNILCSKVYDVAIESPLQLATKLSERLGVEVWLKREDLQPVFSFKLRGAYNMMAKLRKEKLEKGVICSSAGNHAQGVALAAKRLGCDAVIAMPITTPDIKWKSVEKLGATVVLVGDSYDEAQSYAKKRGEEEGRTFIPPFDHPDIIMGQGTVGMEIVRQMKGPLHAIFVPVGGGGLIAGIAAYMKRVSPEVKIIGVEPCDANAMALSLHHGQRVILDQVGGFADGVAVKEVGEEPFRLCRELVDGVVLVGRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGASVVAITSGANMNFDKLRLVTELANVGRQQEAVLATIMPEKPGSFKQFCELVGPMNITEFKYRCNSDKEAVVLYSVGIHTVSELEAMKNRMESSQLKTFNLTQSDLVKDHLRYLMGGRSTVQNEVLCRFIFPERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVAKTEADEFHLRAYNLGYDYAIVSDYEEFQLLMN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29596748 29604332 + Bda002352.1 Bda01g00374 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00374 618 Gene3D - 138 416 IPR036052 -
Bda01g00374 618 ProSiteProfiles ACT-like domain profile. 538 609 IPR001721 -
Bda01g00374 618 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 128 472 IPR036052 -
Bda01g00374 618 SUPERFAMILY ACT-like 525 616 IPR045865 -
Bda01g00374 618 Gene3D Biosynthetic Threonine Deaminase; Domain 3 444 618 IPR038110 -
Bda01g00374 618 Gene3D - 170 261 IPR036052 -
Bda01g00374 618 Pfam Pyridoxal-phosphate dependent enzyme 134 422 IPR001926 -
Bda01g00374 618 PANTHER THREONINE DEHYDRATASE 72 617 - -
Bda01g00374 618 CDD Thr-dehyd 132 426 - -
Bda01g00374 618 CDD ACT_ThrD-I_1 444 527 - -
Bda01g00374 618 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 121 616 IPR005787 GO:0004794|GO:0009097
Bda01g00374 618 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 72 617 - -
Bda01g00374 618 ProSiteProfiles ACT-like domain profile. 445 516 IPR001721 -
Bda01g00374 618 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 158 171 IPR000634 GO:0006520|GO:0030170
Bda01g00374 618 CDD ACT_ThrD-I_2 537 617 - -
Bda01g00374 618 Pfam C-terminal regulatory domain of Threonine dehydratase 435 524 IPR001721 -
Bda01g00374 618 Pfam C-terminal regulatory domain of Threonine dehydratase 530 615 IPR001721 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00374 Bda05g01197 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00374 Bda-Chr1:29596748 Bda05g01197 Bda-Chr5:59985079 0 dispersed
Bda01g00374 Bda-Chr1:29596748 Bda01g00360 Bda-Chr1:29433128 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00374 K01754 - qsu:111997153 953.74