Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00378 ATGGATTGGAATGGCAGCTTCAGACCCTTTGTTGCTCGACCTCCAGAATCTTCCTTTAACCTTTTCTGCAACTACAACTTCGATCAATATCCAGACATGAAGAATGAAGCCATGGGAACTGAAGAAGCTCAAGGTCTATTTACCACAACGGAGATGTGCAACTATGGAGGGCTTGAGAAGAAGAAGAGGTTAACCAGTGATCAATTAGAGTCCTTAGAGAGAAGTTTCCAAGAGGAGATTAAGCTCGACCCTGACAGGAAAATAAAGCTCTCCCGAGAACTGGGTCTGCAGCCGAGGCAGATAGCTGTTTGGTTTCAAAACAGACGAGCTAGATGGAAAGCCAAGCAGCTTGAACGACTCTATGATGCGCTTAAACAGGACTATGACATAGTTTCTAGAGAGAAGCTGAAGCTTCAAGAAGAGGTAGTAAAACTGAAAACTATGCTGAGAGAACAAGCCGGAAAAGACCAAGTGTCGGCCATTTTTACAGATATCTCCGGCGAAGAAACTGTCGAAAGTACATCGGTGACGATACGAGGATCACAGAAGACGAGAGTGACAATGACAAACGCTCACCGTCCGATTGTCGAGTGCAATTACGTATACAATGTGGATGACTACAATCAAGTAGCTCCACCACCTTTCTGGCCTCCTGGTGCTTTGCCATCTTATCCTCAATGA 681 45.08 MDWNGSFRPFVARPPESSFNLFCNYNFDQYPDMKNEAMGTEEAQGLFTTTEMCNYGGLEKKKRLTSDQLESLERSFQEEIKLDPDRKIKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQDYDIVSREKLKLQEEVVKLKTMLREQAGKDQVSAIFTDISGEETVESTSVTIRGSQKTRVTMTNAHRPIVECNYVYNVDDYNQVAPPPFWPPGALPSYPQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29643298 29644705 - Bda002356.1 Bda01g00378 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00378 226 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 210 - -
Bda01g00378 226 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Bda01g00378 226 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Bda01g00378 226 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Bda01g00378 226 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Bda01g00378 226 SMART HOX_1 57 119 IPR001356 GO:0003677
Bda01g00378 226 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Bda01g00378 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 210 IPR045224 GO:0003700
Bda01g00378 226 Coils Coil 107 141 - -
Bda01g00378 226 Pfam Homeobox associated leucine zipper 115 149 IPR003106 GO:0006355|GO:0043565
Bda01g00378 226 Gene3D - 56 123 - -
Bda01g00378 226 CDD homeodomain 60 116 IPR001356 GO:0003677
Bda01g00378 226 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00378 Bda05g01196 CCT
Bda01g00378 Bda03g00698 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00378 Bda-Chr1:29643298 Bda05g01196 Bda-Chr5:59978284 1.60E-100 dispersed
Bda01g00378 Bda-Chr1:29643298 Bda03g00698 Bda-Chr3:5934140 1.28E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15340 PF00046 Homeodomain 3.50E-17 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00378 - - tcc:18598127 274.633