Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00379 ATGGGGGCATCGCTGTCGGGCATGACGGAAGGCTTCAATGGGTCGACGGTTGCTCCGGGTTTGGGTGACATACCTGAAAGCTGCGTCGCTTGTGTTTTTCTCTATCTGACTCCACCGGAAATTTGCAACCTCGCGCGGCTCAATCGGGCATTTCGTGGTGCGGCATCGTCTGATTCTGTTTGGGAAAGTAAGTTGCCTTCTAATTACCATGATCTGCTCGACTTGTTGCCTCCGGAGAGGTACCAAAATTTATCGAAAAAGAATATATTCGCTCTGCTTTCTCGTCCGGTGCCATTTGATGATGGCAACAAGGAAGTCTGGCTGGATAGATTTACTGGAAGGGTTTGCATGTCAATATCGGCAAAGGCAATGGCTATAACTGGAATCGATGATAGGAGATACTGGAATTGGATTCCTACAGAAGAATCCAGATTCCATGTTGTGGCATATTTACAGCAAATTTGGTGGTTTGAAGTAGATGGGGTGGTGAAATTCCCTTTTCCTGCTGATATATACACCCTTTCCTTCAGGCTTCACCTCGGAAAGTTTACAAAAAGGCTTGGAAGACGAGTGAGCAACTTTGATCATACCCATGGCTGGGAAATAAAACCTGTTCGATTTGATTTGTCAACATCAGATGGTCAACAAGCATCGTGCGAATGCTGTATGGACGAGACTGAACGGGATCTAAATGGACACCATAAGCGTGGGTGTTGGGTAGATTACAAAGTTGGCGAATTCATTGTAAATGATTCAGAACCTGTTCCTGAAGTTAGATTTTCAATGAAGCAAATTGACTGCACCCATTCAAAAGGTGGGCTTTGTGTGGATTCTGTATTCATCATTCCAAGTGATCTGAAAGGGTGGAAAAGAAAATGGATTTGA 885 44.63 MGASLSGMTEGFNGSTVAPGLGDIPESCVACVFLYLTPPEICNLARLNRAFRGAASSDSVWESKLPSNYHDLLDLLPPERYQNLSKKNIFALLSRPVPFDDGNKEVWLDRFTGRVCMSISAKAMAITGIDDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPFPADIYTLSFRLHLGKFTKRLGRRVSNFDHTHGWEIKPVRFDLSTSDGQQASCECCMDETERDLNGHHKRGCWVDYKVGEFIVNDSEPVPEVRFSMKQIDCTHSKGGLCVDSVFIIPSDLKGWKRKWI 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29653723 29656266 - Bda002358.1 Bda01g00379 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00379 294 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Bda01g00379 294 Pfam Phloem protein 2 115 283 IPR025886 -
Bda01g00379 294 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 292 - -
Bda01g00379 294 PANTHER F-BOX PROTEIN PP2-A15 1 292 - -
Bda01g00379 294 SUPERFAMILY F-box domain 7 90 IPR036047 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00379 Bda05g01194 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00379 Bda-Chr1:29653723 Bda06g00648 Bda-Chr6:8964925 4.56E-107 dispersed
Bda01g00762 Bda-Chr1:34908512 Bda01g00379 Bda-Chr1:29653723 6.89E-08 transposed
Bda01g00379 Bda-Chr1:29653723 Bda05g01194 Bda-Chr5:59967621 3.12E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00379 - - vvi:100256186 545.043