Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00382 ATGGAGGAGAAGGACAGCCCATTTTCTGGGTCTCCCGGAGTATCGGAAACCCAGTCGCCCCCGGCGCTAATGACTGGGATGGCGCCAAAAGTGGTCTCTATGGATGGGGAGAAAAGCTTTCTACCTTCGACTACGACTAAATCGATGATGGTGACGAGCGGAGGAGGAGGGTCGGTGAGTGGCGATTTTCTCGGGAAAAAGAAGAGGGGAAGACCGAGAAAATATGATTCGGATGGGAACTTAAGCTTGGCTTACCAGAAAATTGCTTCGCTAGATGGGTTTTCTCTGTCACCCACTTCTCCTTCTGAGTTTTCTTCCAAAAAAGGGCGAGGTAGGCCTTCTGGGTCTAGAAATTGGCAACTTCTTGCTTCATTAGGTGAATTGTTTGCTAATAGTGCTGGAAGAGACTTTACGCCTCATATTCTCACTGTGAAAACAGGGGAGGATGTTGCTGGGAAAATTCTTTCATTTTCACAGAAAGGGCCGAGAGGGATTTGCGTTCTGTCAGCAAATGGGACTGTCTCTAATGTTACTATTCACCAACCAGGCTCTTCTGGTGGCATTTTGACATACGAGGGTAGATTTGAGATTCTGTCCTTATCTGGGTCGTTCACAGTAACAGACAGTGGTGGCATGAGGAGTAGAACAGGCGGATTGAGCGTCTCTTTGGCAGGTCCTGACGGTCGAGTCATCGGTGGTGGTATCGCTGGTTTATTAGTGGCTGCCAGCCCCATCCAAATTGTCGTCGGAAGTTTTGTGTCAAACGACTTCAAGATGCATAAAAGGAAGTACCGGAGAGAGTATGCAGTCTCTTCCGCAAACAGAGCTGCACCAAGACACCAGGCCAATCCCACAGGACAAACCCGAGAACGAAGTTCGCTCCTCCCTGTTGATCGGGCAAACGAACGGGGAAGTAGATGGGTGCGAAAGTGA 933 49.3 MEEKDSPFSGSPGVSETQSPPALMTGMAPKVVSMDGEKSFLPSTTTKSMMVTSGGGGSVSGDFLGKKKRGRPRKYDSDGNLSLAYQKIASLDGFSLSPTSPSEFSSKKGRGRPSGSRNWQLLASLGELFANSAGRDFTPHILTVKTGEDVAGKILSFSQKGPRGICVLSANGTVSNVTIHQPGSSGGILTYEGRFEILSLSGSFTVTDSGGMRSRTGGLSVSLAGPDGRVIGGGIAGLLVAASPIQIVVGSFVSNDFKMHKRKYRREYAVSSANRAAPRHQANPTGQTRERSSLLPVDRANERGSRWVRK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29697558 29699359 + Bda002361.1 Bda01g00382 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00382 310 MobiDBLite consensus disorder prediction 1 78 - -
Bda01g00382 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 253 IPR005175 -
Bda01g00382 310 MobiDBLite consensus disorder prediction 276 294 - -
Bda01g00382 310 MobiDBLite consensus disorder prediction 38 55 - -
Bda01g00382 310 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Bda01g00382 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 259 - -
Bda01g00382 310 SMART AT_hook_2 107 119 IPR017956 GO:0003677
Bda01g00382 310 SMART AT_hook_2 66 78 IPR017956 GO:0003677
Bda01g00382 310 MobiDBLite consensus disorder prediction 269 310 - -
Bda01g00382 310 Gene3D - 139 273 - -
Bda01g00382 310 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 11 287 - -
Bda01g00382 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 287 IPR039605 GO:0003680
Bda01g00382 310 CDD DUF296 138 252 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00382 Bda03g00700 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00382 Bda-Chr1:29697558 Bda11g00244 Bda-Chr11:2898066 6.02E-70 dispersed
Bda06g00054 Bda-Chr6:580117 Bda01g00382 Bda-Chr1:29697558 6.65E-73 transposed
Bda15g00752 Bda-Chr15:11110255 Bda01g00382 Bda-Chr1:29697558 2.33E-69 transposed
Bda01g00382 Bda-Chr1:29697558 Bda03g00700 Bda-Chr3:5951529 3.42E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00382 - - jre:109005165 334.724