Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00388 ATGGATGATCCCAGCGGCCTCTCCGACCTTAGACAGCTAGTCAGTGGAGGGAACGCTCATTTTCCCCTGTCGACCTTTTCACAGATTTTACCTCAGCCTTTTTCCGGTCAACAGAATTTTGCAAAGGCAGGAGAAGACTCTCGTAATCATTACGACCTGATGGGGATGACTGGCCATTGCTTGATTACAGACATGTTGCCGGAGTTTAACTCCGACTGTGCTACTGCTACTCGCAGTGCTTCCGCCGGCGCCTGTGCTACGAGTCTGAGTAACGGTTTCGAAGTGGAAACAGCTTGCGACGGCGGTGATGGACCAGGCAGCGGAAGATGGCCGAGACAGGAGACTCTTGCCCTACTGGAAATCAGATCTCGACTGGATCATAAGTTCAGAGAGGCGAATCAAAAGGGTCCACTTTGGGACGAAGTTTCAAGATTCATGTCCGAAGAACATGAGTACCAAAGGAGTGGGAAAAAGTGCAGAGAAAAGTTTGAAAATTTGTACAAGTATTACAGGAAAACTAAGGAAGGAAAAGCTGGAAGACAAGATGGCAAGCATTACAGATTCTTCAGACAGCTAGACGCTCTCTATGGAGAGACAAAAAATGCTGTCGCCTTCCCTCAAACTCACTGTCTCGAAGCCAGAAATTTCCAGCTCCATGATAATGGCGTTTTAAGAGCTCAAAAAGCTGACCAAGAGGCTTTTAGTATTAGTCTGTCTAATTGCTTTGACTTTAATTCCACATCTTCCGATGAAAATGGAATTTTTACAGTAGGACTTGGTGATAGTGATGTTTATGGGGAGAAGAGGAGGAAAAGACAAGGAAGAAGCTGGGGAGAAAAGATAAAAGAGTTTATTGATTTCCAGGTGAGAAAAATGATGGAGAAACAAGAGGTTTGGTTAGACAAGCTTATGAAAACCCTAGAACAGAAGGAGAGAGAAAGGATGGTGAGAGAGGAAGAATGGAGGAGACAAGAAGTGCTGAGGATCGAGAGAGAAAAGAAAATATGGGCCAAGGAGAGAGAATGTATCGAAGCTCGTGACGCAGCTTTAATGGCGGCTTTAGCGAAACTGACCGGGAGAGAACTGGCGAATTCGTTTCAAACGGCCGAAAACGGCGACGAAGGTGATGGTTGGCCGGAATCTCGAAAACCCAAAGAAATTTGCAAGAAACGAAAAGAGAAATCGAGTTTGTTTAGGAACGTTAATGGCTGCTCTCCGTGCATCGGAGGAGACAGCGATCATGTCTTAGGAGAGAACTCAAGGCGACAAGGAAATAAGGAATCTTCTCCTTGTAGCTCCATTAATGGCGTACAAGGTAGCTGTTTGAAGTTCTTGATGAACGAGGGAGAGCCATTGTGGGAGAATTATGGATTGAAGCTCAACAATGGAGATATAAACCAGTGA 1404 45.44 MDDPSGLSDLRQLVSGGNAHFPLSTFSQILPQPFSGQQNFAKAGEDSRNHYDLMGMTGHCLITDMLPEFNSDCATATRSASAGACATSLSNGFEVETACDGGDGPGSGRWPRQETLALLEIRSRLDHKFREANQKGPLWDEVSRFMSEEHEYQRSGKKCREKFENLYKYYRKTKEGKAGRQDGKHYRFFRQLDALYGETKNAVAFPQTHCLEARNFQLHDNGVLRAQKADQEAFSISLSNCFDFNSTSSDENGIFTVGLGDSDVYGEKRRKRQGRSWGEKIKEFIDFQVRKMMEKQEVWLDKLMKTLEQKERERMVREEEWRRQEVLRIEREKKIWAKERECIEARDAALMAALAKLTGRELANSFQTAENGDEGDGWPESRKPKEICKKRKEKSSLFRNVNGCSPCIGGDSDHVLGENSRRQGNKESSPCSSINGVQGSCLKFLMNEGEPLWENYGLKLNNGDINQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29848444 29850703 - Bda002367.1 Bda01g00388 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00388 467 PANTHER - 31 370 - -
Bda01g00388 467 Pfam Myb/SANT-like DNA-binding domain 109 195 IPR044822 -
Bda01g00388 467 ProSiteProfiles Myb-like domain profile. 108 167 IPR001005 -
Bda01g00388 467 CDD GT1 109 174 - -
Bda01g00388 467 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 31 370 - -
Bda01g00388 467 Coils Coil 293 320 - -
Bda01g00388 467 Gene3D - 110 172 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00388 Bda03g01683 CCT
Bda01g00388 Bda03g00704 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00388 Bda-Chr1:29848444 Bda08g00593 Bda-Chr8:6053329 8.55E-68 dispersed
Bda01g00388 Bda-Chr1:29848444 Bda03g00704 Bda-Chr3:5968744 0 wgd
Bda01g00388 Bda-Chr1:29848444 Bda03g01683 Bda-Chr3:56217197 3.33E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15341 PF13837 Myb_DNA-bind_4 4.50E-19 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00388 - - jre:108985011 394.045