Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00405 ATGCCTCCACCTCTCAATGAAAAAGCTCTCGCTGCTCTCAGAAATCATAAGGAAGCTGAGAAAAAAAGGAGGGAGAGGATAAATTCTCATCTCGATAAACTAAGGAATCTTCTTCCCTGTAATTCCAAGACCGACAAAGCTTCTCTTCTTGCAAAAGTAGTTCAACGCGTGAAAGATCTAAAGCAACAAGCTTCTGAAATCTCTGGGATCGAGACTTTCCCATCAGAAATCGATGAAATCTCTGTGCTTTCCGGCAATTATTCCGGGGACGGGAGAACGATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCGGACCTAATACCAGACCTCATCCAGATCCTAAACTCTCTCCACTTAAAAACTCTCACAGCTGAAGTGGTAACTCTCGGAGGACGAATCAGAAACGTTCTCGTTGTCGCCCCAGAAAAAGATTGCAGCGTTGAATCAGTCCATTTCCTACAAAACTCGTTAAGATCACTGCTAGACAGCTCAAATTCGAGCGAGCGATCAAAGAGAAGACGTGTTTTGGATCGCAATGACAGATCTTGA 552 44.2 MPPPLNEKALAALRNHKEAEKKRRERINSHLDKLRNLLPCNSKTDKASLLAKVVQRVKDLKQQASEISGIETFPSEIDEISVLSGNYSGDGRTIFKASLCCEDRSDLIPDLIQILNSLHLKTLTAEVVTLGGRIRNVLVVAPEKDCSVESVHFLQNSLRSLLDSSNSSERSKRRRVLDRNDRS 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30485686 30486725 - Bda002389.1 Bda01g00405 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00405 183 Coils Coil 17 37 - -
Bda01g00405 183 Pfam Helix-loop-helix DNA-binding domain 15 60 IPR011598 GO:0046983
Bda01g00405 183 CDD bHLH_AtAIG1_like 7 82 - -
Bda01g00405 183 PANTHER TRANSCRIPTION FACTOR BHLH30 6 180 IPR045847 GO:0003700|GO:0006355
Bda01g00405 183 Gene3D - 5 69 IPR036638 GO:0046983
Bda01g00405 183 SMART finulus 17 66 IPR011598 GO:0046983
Bda01g00405 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 60 IPR011598 GO:0046983
Bda01g00405 183 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 6 180 - -
Bda01g00405 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00405 Bda-Chr1:30485686 Bda11g01131 Bda-Chr11:11301471 2.75E-48 dispersed
Bda01g00856 Bda-Chr1:41186593 Bda01g00405 Bda-Chr1:30485686 1.03E-35 transposed
Bda14g00178 Bda-Chr14:1228380 Bda01g00405 Bda-Chr1:30485686 2.85E-16 transposed
Bda01g00405 Bda-Chr1:30485686 Bda03g00638 Bda-Chr3:5431357 5.37E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15343 PF00010 HLH 2.70E-11 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00405 - K22484 jcu:105643894 266.544