Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g00419 | ATGAACAACACAGACTACCCCGGCCTTCTCCCCAACAGCAACATCGGCGGCATCGGCTATGGAATCGGGGTCTCTGTCGGTCTTCTCATCCTCATCACCACCATCGTCCTCGCTTCCTACTTCTGCTCCCGAACAGTTAACCGGACGTCTCCTTCTGCCGGTATTAGGAGGACGAGGATGACCCGGCAGTTTACGGGAAGCGCGGAGGTGGTGCTTGAAATAGGGCTTAGCGAGGAAACGATCGAAAGCTACCCGAAGATGGTGTTTTCAGAGGCGAAGATAGAGAGGAAAGAGGGCATAGCTACGAGCTGCTCCATCTGTTTAGGTGATTATAGAAGCTCCGACGTGCTCCGGCAATTGCCGGATTGTCGCCATGTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACATCGCCGTATCCGACGCCACTTTCGACTCCTCTAGCGGAGGTTGTTCCATTAGCCAGTAGCAGAGATCGGTAG | 513 | 53.41 | MNNTDYPGLLPNSNIGGIGYGIGVSVGLLILITTIVLASYFCSRTVNRTSPSAGIRRTRMTRQFTGSAEVVLEIGLSEETIESYPKMVFSEAKIERKEGIATSCSICLGDYRSSDVLRQLPDCRHVFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLASSRDR | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30723031 | 30723543 | - | Bda002405.1 | Bda01g00419 | 419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g00419 | 170 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
| Bda01g00419 | 170 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 169 | IPR045899 | - | |
| Bda01g00419 | 170 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
| Bda01g00419 | 170 | CDD | RING-H2_PA-TM-RING | 104 | 146 | - | - | |
| Bda01g00419 | 170 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
| Bda01g00419 | 170 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 150 | IPR013083 | - | |
| Bda01g00419 | 170 | SUPERFAMILY | RING/U-box | 80 | 152 | - | - | |
| Bda01g00419 | 170 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 169 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00419 | Bda-Chr1:30723031 | Bda09g01624 | Bda-Chr9:47772653 | 9.61E-39 | dispersed | |
| Bda08g00453 | Bda-Chr8:4675371 | Bda01g00419 | Bda-Chr1:30723031 | 1.09E-18 | dispersed | |
| Bda08g00456 | Bda-Chr8:4735004 | Bda01g00419 | Bda-Chr1:30723031 | 2.26E-18 | dispersed | |
| Bda08g00511 | Bda-Chr8:5180809 | Bda01g00419 | Bda-Chr1:30723031 | 1.99E-13 | dispersed | |
| Bda14g00977 | Bda-Chr14:7903613 | Bda01g00419 | Bda-Chr1:30723031 | 1.52E-16 | dispersed | |
| Bda01g00419 | Bda-Chr1:30723031 | Bda13g00361 | Bda-Chr13:4481199 | 1.49E-34 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g00419 | - | - | mdm:103454174 | 199.904 |