Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00419 ATGAACAACACAGACTACCCCGGCCTTCTCCCCAACAGCAACATCGGCGGCATCGGCTATGGAATCGGGGTCTCTGTCGGTCTTCTCATCCTCATCACCACCATCGTCCTCGCTTCCTACTTCTGCTCCCGAACAGTTAACCGGACGTCTCCTTCTGCCGGTATTAGGAGGACGAGGATGACCCGGCAGTTTACGGGAAGCGCGGAGGTGGTGCTTGAAATAGGGCTTAGCGAGGAAACGATCGAAAGCTACCCGAAGATGGTGTTTTCAGAGGCGAAGATAGAGAGGAAAGAGGGCATAGCTACGAGCTGCTCCATCTGTTTAGGTGATTATAGAAGCTCCGACGTGCTCCGGCAATTGCCGGATTGTCGCCATGTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACATCGCCGTATCCGACGCCACTTTCGACTCCTCTAGCGGAGGTTGTTCCATTAGCCAGTAGCAGAGATCGGTAG 513 53.41 MNNTDYPGLLPNSNIGGIGYGIGVSVGLLILITTIVLASYFCSRTVNRTSPSAGIRRTRMTRQFTGSAEVVLEIGLSEETIESYPKMVFSEAKIERKEGIATSCSICLGDYRSSDVLRQLPDCRHVFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLASSRDR 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 30723031 30723543 - Bda002405.1 Bda01g00419 419
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00419 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Bda01g00419 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 169 IPR045899 -
Bda01g00419 170 SMART ring_2 104 145 IPR001841 -
Bda01g00419 170 CDD RING-H2_PA-TM-RING 104 146 - -
Bda01g00419 170 Pfam Ring finger domain 103 146 IPR001841 -
Bda01g00419 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Bda01g00419 170 SUPERFAMILY RING/U-box 80 152 - -
Bda01g00419 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 169 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00419 Bda-Chr1:30723031 Bda09g01624 Bda-Chr9:47772653 9.61E-39 dispersed
Bda08g00453 Bda-Chr8:4675371 Bda01g00419 Bda-Chr1:30723031 1.09E-18 dispersed
Bda08g00456 Bda-Chr8:4735004 Bda01g00419 Bda-Chr1:30723031 2.26E-18 dispersed
Bda08g00511 Bda-Chr8:5180809 Bda01g00419 Bda-Chr1:30723031 1.99E-13 dispersed
Bda14g00977 Bda-Chr14:7903613 Bda01g00419 Bda-Chr1:30723031 1.52E-16 dispersed
Bda01g00419 Bda-Chr1:30723031 Bda13g00361 Bda-Chr13:4481199 1.49E-34 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00419 - - mdm:103454174 199.904