Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00422 ATGAACGACTTGCTTTCCTCTACTTCATTCCCCAGGGATGAACATGTCATCGAGATGACAGGCCCGCCGGCATCCTCTCCGGCTGCCCATATGGGTAAATTCTTCAACGACGTCGAAGCCATTAAGGAAGATCTTAGAGAGCTGGAGCTCCTCCGTGAAAATCTGCAGAACTCTCACGAGAAGAGCAAAGCTCTTCACAGCACTAAGGCGGTGAAAGAGCTCCGGTCAAAAATGGACGCGGACGTTTCTCTGGCTCTGAGCAAGGCGAAGCTGATCAAGGCTCAGCTCGAGGCTCTCGACCGATCAAACGTCACGAATCGGAATTTGCCTGGTTGCGGCGTCGGGTCGTCGTCGGACCGAACGCGAACCTCTGTAGTGAATGGGCTGAGAAAGAATTTAAAGAACTCGATGGAGAGCTTTACCGCTCTGAGGGAGAAGATCTCGTCGGAGTATAGAGACACCGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACCATTGATCTATTGATCTCCACTGGCGAAAGCGAGACGTTCTTACAGAAAGCAATACAAGAGCAAGGGAGAGGGAGAATCTTAGACACCATAAACGAGATTCAGGAGCGGCAAGATGCAGTGAGAGAGCTGGAGAAGAATCTGAAGGAGCTTCACCAGGTCTTCCTGGACATGGCCGTCCTGGTCCAGGCTCAGGGGGAGCAGCTGGACGACATCGAGAGCCAGGTGACGCGTGCTCATTCGATCGTCAAAGACGGTACCCGCCAGTTGCAGACGGCGAGGACCCTCCAGAAGAACACTAGAAAATGGGTTATTATTGCCATCATCATTTTGCTGGTCATCATCTTCATCGCCGTTGTCAGTGCTCGGCCATGGAAGAAGTAG 894 52.35 MNDLLSSTSFPRDEHVIEMTGPPASSPAAHMGKFFNDVEAIKEDLRELELLRENLQNSHEKSKALHSTKAVKELRSKMDADVSLALSKAKLIKAQLEALDRSNVTNRNLPGCGVGSSSDRTRTSVVNGLRKNLKNSMESFTALREKISSEYRDTVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERQDAVRELEKNLKELHQVFLDMAVLVQAQGEQLDDIESQVTRAHSIVKDGTRQLQTARTLQKNTRKWVIIAIIILLVIIFIAVVSARPWKK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30755288 30756843 - Bda002410.1 Bda01g00422 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00422 297 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bda01g00422 297 Gene3D - 28 161 - -
Bda01g00422 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Bda01g00422 297 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 8 291 - -
Bda01g00422 297 Coils Coil 197 224 - -
Bda01g00422 297 MobiDBLite consensus disorder prediction 1 28 - -
Bda01g00422 297 PANTHER SYNTAXIN 8 291 IPR045242 -
Bda01g00422 297 SMART SynN_4 26 152 IPR006011 GO:0016020
Bda01g00422 297 Gene3D - 198 292 - -
Bda01g00422 297 CDD SNARE_syntaxin1-like 200 262 - -
Bda01g00422 297 Coils Coil 38 65 - -
Bda01g00422 297 Pfam SNARE domain 237 288 IPR000727 -
Bda01g00422 297 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Bda01g00422 297 SMART tSNARE_6 196 263 IPR000727 -
Bda01g00422 297 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Bda01g00422 297 CDD SynN 31 188 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00422 Bda-Chr1:30755288 Bda09g01276 Bda-Chr9:44512231 7.28E-117 dispersed
Bda01g00422 Bda-Chr1:30755288 Bda01g00430 Bda-Chr1:31064708 0 proximal
Bda01g00422 Bda-Chr1:30755288 Bda03g00658 Bda-Chr3:5593717 2.61E-176 wgd
Bda01g00422 Bda-Chr1:30755288 Bda05g01127 Bda-Chr5:59493476 2.68E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00422 K08486 - csv:101208931 417.157