Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00422 | ATGAACGACTTGCTTTCCTCTACTTCATTCCCCAGGGATGAACATGTCATCGAGATGACAGGCCCGCCGGCATCCTCTCCGGCTGCCCATATGGGTAAATTCTTCAACGACGTCGAAGCCATTAAGGAAGATCTTAGAGAGCTGGAGCTCCTCCGTGAAAATCTGCAGAACTCTCACGAGAAGAGCAAAGCTCTTCACAGCACTAAGGCGGTGAAAGAGCTCCGGTCAAAAATGGACGCGGACGTTTCTCTGGCTCTGAGCAAGGCGAAGCTGATCAAGGCTCAGCTCGAGGCTCTCGACCGATCAAACGTCACGAATCGGAATTTGCCTGGTTGCGGCGTCGGGTCGTCGTCGGACCGAACGCGAACCTCTGTAGTGAATGGGCTGAGAAAGAATTTAAAGAACTCGATGGAGAGCTTTACCGCTCTGAGGGAGAAGATCTCGTCGGAGTATAGAGACACCGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACCATTGATCTATTGATCTCCACTGGCGAAAGCGAGACGTTCTTACAGAAAGCAATACAAGAGCAAGGGAGAGGGAGAATCTTAGACACCATAAACGAGATTCAGGAGCGGCAAGATGCAGTGAGAGAGCTGGAGAAGAATCTGAAGGAGCTTCACCAGGTCTTCCTGGACATGGCCGTCCTGGTCCAGGCTCAGGGGGAGCAGCTGGACGACATCGAGAGCCAGGTGACGCGTGCTCATTCGATCGTCAAAGACGGTACCCGCCAGTTGCAGACGGCGAGGACCCTCCAGAAGAACACTAGAAAATGGGTTATTATTGCCATCATCATTTTGCTGGTCATCATCTTCATCGCCGTTGTCAGTGCTCGGCCATGGAAGAAGTAG | 894 | 52.35 | MNDLLSSTSFPRDEHVIEMTGPPASSPAAHMGKFFNDVEAIKEDLRELELLRENLQNSHEKSKALHSTKAVKELRSKMDADVSLALSKAKLIKAQLEALDRSNVTNRNLPGCGVGSSSDRTRTSVVNGLRKNLKNSMESFTALREKISSEYRDTVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERQDAVRELEKNLKELHQVFLDMAVLVQAQGEQLDDIESQVTRAHSIVKDGTRQLQTARTLQKNTRKWVIIAIIILLVIIFIAVVSARPWKK | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30755288 | 30756843 | - | Bda002410.1 | Bda01g00422 | 422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00422 | 297 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bda01g00422 | 297 | Gene3D | - | 28 | 161 | - | - | |
Bda01g00422 | 297 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Bda01g00422 | 297 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 8 | 291 | - | - | |
Bda01g00422 | 297 | Coils | Coil | 197 | 224 | - | - | |
Bda01g00422 | 297 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Bda01g00422 | 297 | PANTHER | SYNTAXIN | 8 | 291 | IPR045242 | - | |
Bda01g00422 | 297 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
Bda01g00422 | 297 | Gene3D | - | 198 | 292 | - | - | |
Bda01g00422 | 297 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Bda01g00422 | 297 | Coils | Coil | 38 | 65 | - | - | |
Bda01g00422 | 297 | Pfam | SNARE domain | 237 | 288 | IPR000727 | - | |
Bda01g00422 | 297 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
Bda01g00422 | 297 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Bda01g00422 | 297 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
Bda01g00422 | 297 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00422 | Bda-Chr1:30755288 | Bda09g01276 | Bda-Chr9:44512231 | 7.28E-117 | dispersed | |
Bda01g00422 | Bda-Chr1:30755288 | Bda01g00430 | Bda-Chr1:31064708 | 0 | proximal | |
Bda01g00422 | Bda-Chr1:30755288 | Bda03g00658 | Bda-Chr3:5593717 | 2.61E-176 | wgd | |
Bda01g00422 | Bda-Chr1:30755288 | Bda05g01127 | Bda-Chr5:59493476 | 2.68E-146 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00422 | K08486 | - | csv:101208931 | 417.157 |