Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00423 ATGGCGACGTACTTCCATGGAAACTCCGAAATCCAACCGCCTGACGGATTGCAAACCCTAATCCTGATGAATCCCGGCTACATCCAGTACTCCGACAGACCCCCACCGGCCTCTAGCAACCTAGTATTCTTCAACTCTCATGTCGGGAATCCCCTCTATTTACCCAAGCTGCCTCACGCGCCGCTATCCCAACCTCAGCACTTGGTTGGCATCCCTCTTTCTGCCGCCACCTCCTCGGACCCGAACTCTCTATCCTCGCACAGCCACCATGATGTTTCTCCATTGCATGGCTTCATCCAACGCTCCCAAAATAGGTTTTGTAGCTCAAATGATCATCTCTCGACGGTGGCGCGTGATAGCCCACGCCCTAAGCAAGGACTGTCCCTTACCCTCTCATCTCATGAGCCAGGGTATGGATTAGTCCGAATTCCATCTGAAGCTCAACAGGAAGTTTCCGGCGAGGATGTGCACATTGCAGGTGGATCCTCCTCTGCTTCCGGCGTCTCACTTCCGGCGGTGCGAAGCATATCACTGAGCACGAAGTACTTAAGAGCGGCTCAGGAGCTTCTTGATGAGGTGGCAAACGTCGGCAATAATGGAGTTAAGAAAGAGACCTTGAAGAAGGCCGATGACCGACGGACTAAGCAGGAGGAAGAGTCATTAGCACTCGCCAGAGACAAAACGGATGGAGTAGAAGACACAGCGAAGACCAGTCCAGAGCTTTCCGCCGCCGAGAGGCAAGAAATTCAGATGAAGAAGGCCAAGTTTATTAACATGCTTGATGAGGTGGAGCAAAGATACAGACAGTATTATCATCAAATGCAGATTCTGGTTTCCTCTTTCGAACAAGCAGTTGGAATAGGCTCTGCAAGAACTTACACAGCCCTTGCGTTTCAGACCATTTCGAAGCAATTCAGATGCTTAAAAGACACAATCACCGCCCAAATTCAAGTGGCAAACAAGAACTTAGGCAAAGAGGACTGCCATGGCAGCAAACTAAGATTTGTAGACTATCAGTTTCATCAACAACGGCCTCTACAGAACTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCGGTTTCTGTTCTTCGAGCCTGGCTATTCGAACACTTTCTTCACCCGTATCCAAAAGATTCAGACAAGCAAATGCTGGCGAAACAGACAGGACTCACTAGGAGTCAGGTTTCAAATTGGTTCATCAATGCTCGAGTTCGTCTGTGGAAGCCGATGGTAGAAGACATGTACATGGAAGAAATCAAGGAGCGAGAACAGAACTTATCAGCAGACAAAACCACCAAAAACAATGAGAATACGACTTCCAAATCCACAACACCAACTCCACAAGACAAAAATCATGCAATAGACAACCAGCTTCCGAGTTTCAACACAAAACTGGACGATCTTTCCCATCTTCACCCTCCCCCGGCAATTTCCTTTTCTTCATCGGCTACGACACTGGAAGCCGTAAATGTTCGAAGCCGATCCTGGCTAATTGGGTCATCGGAACTTGATGGAATCACACAAGGAAGTCCAAAGAGACAACGAATCGATGAACTGATGCAGTCCCCAAACAGTATTCCTATAAACATTGAAGCTAAGCTAGAGGAAGCCAATAATGAGCACATTTCAATGAAGTTTAACAGCGAGAGGCATGGCAGAGATGGCTATTCCTTCATTGGAGGTCAAGTTAATTTCATTGGAGGTTTCGAGCAATACCCTATTACAGATATTGAAAGGTTTGACGCTGAGCCATTCACAACAGGATTTTCCGGCAACGGTGTTTCTCTCACTCTTGGTCTTCCCCACTCTGAAAATCTCACGCTATCGGTAGCCAATCATACTTTCCTTCCAAATCAAAACATAAATTTTGGAAGAAACGGTTTCGACCCAATCGACATATCAACACCACACTCTACATCTGCATTCGGGAACATCGATGTACAAGATCGAAAAACGATTGGTTGCACAATTGTTGCCCGACTTTGTGACGTGAAAATGAGAAGTTTTCTGCATGAAGGAGACAATATCCTGCTTCACGGGACCTTCCAATGTGCTATTCTGCAATGTGAAAGATCAGAGTTTTAA 2109 46.85 MATYFHGNSEIQPPDGLQTLILMNPGYIQYSDRPPPASSNLVFFNSHVGNPLYLPKLPHAPLSQPQHLVGIPLSAATSSDPNSLSSHSHHDVSPLHGFIQRSQNRFCSSNDHLSTVARDSPRPKQGLSLTLSSHEPGYGLVRIPSEAQQEVSGEDVHIAGGSSSASGVSLPAVRSISLSTKYLRAAQELLDEVANVGNNGVKKETLKKADDRRTKQEEESLALARDKTDGVEDTAKTSPELSAAERQEIQMKKAKFINMLDEVEQRYRQYYHQMQILVSSFEQAVGIGSARTYTALAFQTISKQFRCLKDTITAQIQVANKNLGKEDCHGSKLRFVDYQFHQQRPLQNLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEDMYMEEIKEREQNLSADKTTKNNENTTSKSTTPTPQDKNHAIDNQLPSFNTKLDDLSHLHPPPAISFSSSATTLEAVNVRSRSWLIGSSELDGITQGSPKRQRIDELMQSPNSIPINIEAKLEEANNEHISMKFNSERHGRDGYSFIGGQVNFIGGFEQYPITDIERFDAEPFTTGFSGNGVSLTLGLPHSENLTLSVANHTFLPNQNINFGRNGFDPIDISTPHSTSAFGNIDVQDRKTIGCTIVARLCDVKMRSFLHEGDNILLHGTFQCAILQCERSEF 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30787966 30790406 - Bda002412.1 Bda01g00423 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00423 702 Coils Coil 246 266 - -
Bda01g00423 702 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 637 - -
Bda01g00423 702 CDD homeodomain 357 418 IPR001356 GO:0003677
Bda01g00423 702 MobiDBLite consensus disorder prediction 113 135 - -
Bda01g00423 702 MobiDBLite consensus disorder prediction 438 467 - -
Bda01g00423 702 MobiDBLite consensus disorder prediction 73 90 - -
Bda01g00423 702 MobiDBLite consensus disorder prediction 432 467 - -
Bda01g00423 702 SUPERFAMILY Homeodomain-like 358 424 IPR009057 -
Bda01g00423 702 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 637 - -
Bda01g00423 702 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Bda01g00423 702 MobiDBLite consensus disorder prediction 205 242 - -
Bda01g00423 702 Pfam Associated with HOX 179 313 IPR006563 -
Bda01g00423 702 SMART HOX_1 357 421 IPR001356 GO:0003677
Bda01g00423 702 Gene3D - 360 439 - -
Bda01g00423 702 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Bda01g00423 702 Coils Coil 424 444 - -
Bda01g00423 702 MobiDBLite consensus disorder prediction 73 94 - -
Bda01g00423 702 MobiDBLite consensus disorder prediction 205 234 - -
Bda01g00423 702 SMART prehox3 170 314 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00423 Bda03g01628 CCT
Bda01g00423 Bda05g01130 CCT
Bda01g00423 Bda03g00660 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00423 Bda-Chr1:30787966 Bda01g00515 Bda-Chr1:32123874 1.34E-89 dispersed
Bda01g00423 Bda-Chr1:30787966 Bda03g00660 Bda-Chr3:5622800 0 wgd
Bda01g00423 Bda-Chr1:30787966 Bda03g01628 Bda-Chr3:55639780 0 wgd
Bda01g00423 Bda-Chr1:30787966 Bda03g00272 Bda-Chr3:2397758 8.37E-86 wgd
Bda01g00423 Bda-Chr1:30787966 Bda05g01130 Bda-Chr5:59513484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15347 PF07526 POX 1.90E-44 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00423 - - jre:108982860 755.362