Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00462 ATGCCATTCAAAAGTGTAGTTCGTGAAATAAGAGAGAGTATTGGAAACCTAAGAAGAAAAGGGGAAGAAGGAAGACCTTTACGCCATCCAGGAAAATCACACATAGCACCGGAGCAGCCTCCCTGTTCATCATCGCCTTCTTTGATTCCACAGAGCCGATGGGCGAGTTTGCCTACCGAGTTGATTCTGGACATAATTCAAAGAGTCGAATCAAGCGAAACCTCCTGGCCTGGCCGGAGAGATGTTGTTGCTTGTGCTTCCGTTTGTAAATCATGGAGGGAGATTGCTATAGGAGTTGTTAAAACCCCCGAGAAGTGTGGCTTGCTGACCTTTCCTATCTCCCTCAAACAGCCGGGACCAAGAGAAACGCCAATCCAGTGCTTTATAAGGAGGGACAGATCAACCTCTACATATCGACTCTATCTCGGTCTAAGTCCGGCCCTGTCCGGCAACATGAGCAAGTTGTTACTAGCCGGAAGGAAAGTCCGACGGGCAACCCATACCGATTTCATAATATCCTTAGTCGCCGATGATTTCTCCCGAGCAAGCAACACTTATATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATACACGATAGTCAACCTCCACTGGATCCGACTATGCAAACAACTTCTAGTTCGCAACGAAGAGGCCATTTAAAGCGGGTTTCACCGAGAGTATCCATTGGAGACTATAATGTTTCCTCCATATCTTACGAGCTCAATGTCCTTCGAACCAGAGGTCCGAGGAGAATGCAGTGCACCATGAATTCCATACCAGTTTCATCCATTCAAGAAGGCGGCACAGCCCCTACTCCAACCGAATTTATCAAATGTCTGGACGAGAAACAAGATCCTCCACTGACAGTAGCCAAGAAAAAGAAGCGTCAAGTCGAGATTAGTTTCAGTAGTCTATCCGAGCCTCTCATCCCAGTTCATTCACCACTTGTTCTGAAAAATAAAGCTCCGAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTCAGAGGACGGGTAACAGTCGCTTCTGTAAAAAATTTCCAGCTCGTGGCATCTGCTGATGATGTGCGCCAAAATATTTCTGCTGCTGAGCAGGAGAAAGTGATCCTTCAATTTGGTAAAATCGGGAAAAACATATTCACCATGGATTATCGATATCCTCTATCCACATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCTGCCTGTGAATGA 1242 46.05 MPFKSVVREIRESIGNLRRKGEEGRPLRHPGKSHIAPEQPPCSSSPSLIPQSRWASLPTELILDIIQRVESSETSWPGRRDVVACASVCKSWREIAIGVVKTPEKCGLLTFPISLKQPGPRETPIQCFIRRDRSTSTYRLYLGLSPALSGNMSKLLLAGRKVRRATHTDFIISLVADDFSRASNTYIGKLRSNFMGTKFSIHDSQPPLDPTMQTTSSSQRRGHLKRVSPRVSIGDYNVSSISYELNVLRTRGPRRMQCTMNSIPVSSIQEGGTAPTPTEFIKCLDEKQDPPLTVAKKKKRQVEISFSSLSEPLIPVHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADDVRQNISAAEQEKVILQFGKIGKNIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31717422 31718999 - Bda002463.1 Bda01g00462 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00462 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Bda01g00462 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bda01g00462 413 MobiDBLite consensus disorder prediction 201 222 - -
Bda01g00462 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Bda01g00462 413 PANTHER TUBBY-RELATED 1 413 - -
Bda01g00462 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Bda01g00462 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Bda01g00462 413 MobiDBLite consensus disorder prediction 17 32 - -
Bda01g00462 413 Pfam Tub family 115 408 IPR000007 -
Bda01g00462 413 MobiDBLite consensus disorder prediction 201 226 - -
Bda01g00462 413 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Bda01g00462 413 SUPERFAMILY Tubby C-terminal domain-like 103 413 IPR025659 -
Bda01g00462 413 MobiDBLite consensus disorder prediction 17 47 - -
Bda01g00462 413 Pfam F-box domain 54 96 IPR001810 GO:0005515
Bda01g00462 413 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Bda01g00462 413 Gene3D - 49 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00462 Bda-Chr1:31717422 Bda03g00263 Bda-Chr3:2336476 0 dispersed
Bda01g00462 Bda-Chr1:31717422 Bda01g00525 Bda-Chr1:32229193 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15351 PF01167 Tub 3.20E-104 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00462 K19600 - zju:107420271 615.92