Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00466 ATGTCACCGCCGGCGAGGAGCAAAGGCTGGAATGGGTCGCTGGAGAAGCATTATCCTCCGCCATTTGCCTCCCATGAAGAGGTCTCGGTAGACCCCATTATCTTCTGGGACACTCTCCGGCGCTTCCATTTCACTATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTTCTCCCTAATACCCTTTTTTTACTTCATTTCTGCAAGCCTTCTAAATCTCTCTCTCTAGCAGCTGCATTTGCTTTTAGTGACCCTTCATGCATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAAAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGGGAAGTTCGACTGTGGTTATTTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGAGGAGTGCTTTACCATCCAGAAGAGCCAGCTATATTATCACCGCCCTCATTTCCACATTTCAACAATGTGCAAGCACTTGTTCCCTACAAACACGGGGGGCAGTACCATTCCAGTGGCCGGAGAAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCTCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCTGATGAGAGGATGGTTTACCAAAACATAGGGTTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGAGAGGCAGACACTCGGAGTTAATGAATGA 1029 44.7 MSPPARSKGWNGSLEKHYPPPFASHEEVSVDPIIFWDTLRRFHFTMNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNTLFLLHFCKPSKSLSLAAAFAFSDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEGKFDCGYFVSAKVGSEILRGVLYHPEEPAILSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDERMVYQNIGLKDKERYKRELKEYKERQTLGVNE 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31772548 31774037 + Bda002467.1 Bda01g00466 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00466 342 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bda01g00466 342 CDD HMGB-UBF_HMG-box 266 330 - -
Bda01g00466 342 SMART ARID_2 26 116 - -
Bda01g00466 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Bda01g00466 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 338 - -
Bda01g00466 342 MobiDBLite consensus disorder prediction 243 270 - -
Bda01g00466 342 SMART hmgende2 265 334 IPR009071 -
Bda01g00466 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 338 - -
Bda01g00466 342 SUPERFAMILY ARID-like 24 129 IPR036431 GO:0003677
Bda01g00466 342 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bda01g00466 342 MobiDBLite consensus disorder prediction 247 261 - -
Bda01g00466 342 SMART bright_3 30 121 IPR001606 GO:0003677
Bda01g00466 342 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bda01g00466 342 Gene3D - 23 127 IPR036431 GO:0003677
Bda01g00466 342 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Bda01g00466 342 SUPERFAMILY HMG-box 263 335 IPR036910 -
Bda01g00466 342 Gene3D High mobility group box domain 250 339 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00466 Bda-Chr1:31772548 Bda12g00990 Bda-Chr12:41215928 3.37E-77 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15352 PF01388 ARID 2.90E-18 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00466 - - csv:101219101 456.832