Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00466 ATGTCACCGCCGGCGAGGAGCAAAGGCTGGAATGGGTCGCTGGAGAAGCATTATCCTCCGCCATTTGCCTCCCATGAAGAGGTCTCGGTAGACCCCATTATCTTCTGGGACACTCTCCGGCGCTTCCATTTCACTATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTTCTCCCTAATACCCTTTTTTTACTTCATTTCTGCAAGCCTTCTAAATCTCTCTCTCTAGCAGCTGCATTTGCTTTTAGTGACCCTTCATGCATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAAAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGGGAAGTTCGACTGTGGTTATTTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGAGGAGTGCTTTACCATCCAGAAGAGCCAGCTATATTATCACCGCCCTCATTTCCACATTTCAACAATGTGCAAGCACTTGTTCCCTACAAACACGGGGGGCAGTACCATTCCAGTGGCCGGAGAAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCTCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCTGATGAGAGGATGGTTTACCAAAACATAGGGTTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGAGAGGCAGACACTCGGAGTTAATGAATGA 1029 44.7 MSPPARSKGWNGSLEKHYPPPFASHEEVSVDPIIFWDTLRRFHFTMNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNTLFLLHFCKPSKSLSLAAAFAFSDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEGKFDCGYFVSAKVGSEILRGVLYHPEEPAILSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDERMVYQNIGLKDKERYKRELKEYKERQTLGVNE 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31772548 31774037 + Bda002467.1 Bda01g00466 466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00466 342 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bda01g00466 342 CDD HMGB-UBF_HMG-box 266 330 - -
Bda01g00466 342 SMART ARID_2 26 116 - -
Bda01g00466 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Bda01g00466 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 338 - -
Bda01g00466 342 MobiDBLite consensus disorder prediction 243 270 - -
Bda01g00466 342 SMART hmgende2 265 334 IPR009071 -
Bda01g00466 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 338 - -
Bda01g00466 342 SUPERFAMILY ARID-like 24 129 IPR036431 GO:0003677
Bda01g00466 342 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bda01g00466 342 MobiDBLite consensus disorder prediction 247 261 - -
Bda01g00466 342 SMART bright_3 30 121 IPR001606 GO:0003677
Bda01g00466 342 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bda01g00466 342 Gene3D - 23 127 IPR036431 GO:0003677
Bda01g00466 342 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Bda01g00466 342 SUPERFAMILY HMG-box 263 335 IPR036910 -
Bda01g00466 342 Gene3D High mobility group box domain 250 339 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00466 - - - csv:101219101 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00466 Bda-Chr1:31772548 Bda12g00990 Bda-Chr12:41215928 3.37E-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15352 PF01388 ARID 2.90E-18 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00466 Bda_Chr01 FPKM 0.245333 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0