Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00473 ATGCAACAAGGAGATTACAGTTCCGCTCCGTATTACCAATACCCGCACCTCCAAAACCCTAATCCTGTTCCCAATTCTACTTCCACTCCCCCTGATCTCCACCAACCGACCCCCTTCGCCTCTGCGCCTCCCTTTTCCAACAATTACGCTCCCATTCCCTCCGATTACTCTGCTTATCCGCCTAATTACTCTTCATATTCACAGAATTCCGATCATCTTTCCGTCTCCCCATCTGCTCCTTCCTTTTCTCCCTCCTCCAACCCTAATTTCCAGCCTTTCAATCCCACTCCTCAGCCCTCTCCTTTTCCTCCGTTTGAGTCCCACGTTCCCTTTCAATCTTCGCCACAGCAGCAGTCTTATTATTCATCTTATGATCAGCATCAAACATCTCACAATTATGCCCCATCGTCCTCTTCTGTTTCCGCCAACTCTGCTTCTGATCTGACTCTGAGTTCCAATTCTCAGCACTCGTCCGAGCAATATGCTCCGTTTGGATCCGCCGTGCCGCCTGTATACGAGAACCCCTATGAGAATGCTGTGAAATTTAATCAGGGTAGTGGATTTGTTGATGATAAATATGGAAGTTACAATCAAAGCAAATCTGGTTTTGGTTTGGATCTGTACGGGAATAGGATGGACAATGGTGTGACCCGTTATGAATCTAGTTATGATGATGGCTATGGGGACGGCGTGTTTGCTTACCAAGGGGGCAAGGTTGAGCCATATGGAGCTCGCGGTACCGCCCCCAACTCTTCGACATGGACTGGATTTGATGATTATGGGAGGCCAATCAGTTTTCCTTCTGTGAAAGAGCCTTCCAGTGGTTCAAGCAAGATTGTGCGAGCCACTCCAAAAGCAGATACTCAGGAAGACTTCAAGAGCGGTGTGCAAAAGTTTCGGGTTAAGCTGTTGGCTGAAAGCGGAGGCCAGACTACTTCGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTTGATCAAAATACTGGTCGGACATTGAGAATTTATCCTCTTGAGACCATTACAAGATGTGAAGTGATAGAGTCATCCACATTAGCATTTTGGTCTAAGAGCTCAGTGGATATTGAGCCACGAAGGATAAGATTGCAGTCCAATAGTTACACTACGAATACTCTTTTGGACACAGTGACTGCAGCAACAGTACAGTTTAAGGAGATGGGTGGAAGAAGCAGGCCACCTGATTCTTTGAAGTTGAGTGAACAGTCTATAGAAAGGAAGAAAGGATTTGGTGACTGGATGAGCTTAATGAAGCTTGGAAATGTGGAAAAAGATCATTGGGTTCCTGATGAAGCTGTTTCTAAGTGCACGTCTTGTGGAACAGATTTTGGTGCTTTTGTGCGCAAGCATCACTGCAGGAACTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGTCGAATTACTTTAACTTCCGAGGAGAATGCCCCTCTGGTTCGAGTTTGTGACAGATGCTTGGCAGAAGTAACTCGGAGGCTGACTAATGCTAAAGAAGCTGCTAGTAAGCCTGCATTGACGAGTCATGAGGATCTGGCCAAAAAGCTTCAGGATGAAATGGAAAGAAACCGCAAGTCATCAGGTTCTAGATCTGATGGTCCTGGGAAGCGAATGAAGGAGGTTGCTTGCCCCACCTGCACTGTTCATTTGCAGGTTCAGGTTCCCACCTCAGGTTCTGAGACAATAGAATGCGGCGTATGCCAGAATGCATTCCTTGTGAGTGCATCCTGA 1752 46.58 MQQGDYSSAPYYQYPHLQNPNPVPNSTSTPPDLHQPTPFASAPPFSNNYAPIPSDYSAYPPNYSSYSQNSDHLSVSPSAPSFSPSSNPNFQPFNPTPQPSPFPPFESHVPFQSSPQQQSYYSSYDQHQTSHNYAPSSSSVSANSASDLTLSSNSQHSSEQYAPFGSAVPPVYENPYENAVKFNQGSGFVDDKYGSYNQSKSGFGLDLYGNRMDNGVTRYESSYDDGYGDGVFAYQGGKVEPYGARGTAPNSSTWTGFDDYGRPISFPSVKEPSSGSSKIVRATPKADTQEDFKSGVQKFRVKLLAESGGQTTSDVLCQIGLDGIRMLDQNTGRTLRIYPLETITRCEVIESSTLAFWSKSSVDIEPRRIRLQSNSYTTNTLLDTVTAATVQFKEMGGRSRPPDSLKLSEQSIERKKGFGDWMSLMKLGNVEKDHWVPDEAVSKCTSCGTDFGAFVRKHHCRNCGDIFCDKCTQGRITLTSEENAPLVRVCDRCLAEVTRRLTNAKEAASKPALTSHEDLAKKLQDEMERNRKSSGSRSDGPGKRMKEVACPTCTVHLQVQVPTSGSETIECGVCQNAFLVSAS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31808588 31813406 - Bda002475.1 Bda01g00473 473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00473 583 MobiDBLite consensus disorder prediction 524 544 - -
Bda01g00473 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 502 IPR013083 -
Bda01g00473 583 MobiDBLite consensus disorder prediction 1 166 - -
Bda01g00473 583 Coils Coil 513 533 - -
Bda01g00473 583 MobiDBLite consensus disorder prediction 90 108 - -
Bda01g00473 583 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g00473 583 PANTHER PROTEIN FREE1 1 582 - -
Bda01g00473 583 PANTHER PROTEIN FREE1 1 582 IPR045893 GO:0036258|GO:0043130
Bda01g00473 583 Pfam FYVE zinc finger 434 498 IPR000306 GO:0046872
Bda01g00473 583 MobiDBLite consensus disorder prediction 266 286 - -
Bda01g00473 583 MobiDBLite consensus disorder prediction 524 545 - -
Bda01g00473 583 SUPERFAMILY FYVE/PHD zinc finger 433 502 IPR011011 -
Bda01g00473 583 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 438 498 IPR017455 -
Bda01g00473 583 MobiDBLite consensus disorder prediction 109 162 - -
Bda01g00473 583 MobiDBLite consensus disorder prediction 269 283 - -
Bda01g00473 583 MobiDBLite consensus disorder prediction 32 89 - -
Bda01g00473 583 SMART fyve_4 430 499 IPR000306 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00473 - - - mcha:111008454 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00473 Bda-Chr1:31808588 Bda02g00569 Bda-Chr2:46506664 2.15E-11 dispersed
Bda01g00473 Bda-Chr1:31808588 Bda11g00082 Bda-Chr11:971885 2.85E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00473 Bda_Chr01 FPKM 18.950377 17.461143 10.472124 11.75824 5.982035 7.146446 6.654338 8.483742 9.687975