Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00475 ATGAGTGCGTCGAGGTTTGTTAAATGCGTTACAGTTGGTGATGGGGCTGTCGGAAAAACTTGTATGCTGATTTCTTACACCAGCAACACTTTCCCCACTGACTATGTTCCAACAGTTTTCGATAATTTTAGTGCCAATGTTGTAGTTGATGGAAGCACTGTCAACCTAGGGTTATGGGATACTGCAGCAGGTCAGGAGGATTACAATAGGTTAAGACCATTGAGCTATCGAGGTGCTGATGTATTTATACTTGCTTTCTCTCTGATAAGCAAGGCTAGTTATGAAAATGTCGCAAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCAGGTGTTCCCATTATTCTTGTTGGAACGAAGTTGGATCTTCGAGATGACAAACAGTTCCTCATAGATCATCCTGGTGCGGTGCCCATTACTACTGCTCAGGGAGAGGAATTGAGAAAATTGATTGGAGCTCCTGCATACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTCGATGCAGCCATTAAAGTTGTCCTCCAACCACCAAAGCAAAAGAAGAATAAAAAGAAGCTTCATGGTGGTTGCTCTATACTATGA 597 42.38 MSASRFVKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKNKKKLHGGCSIL 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31828017 31829654 - Bda002477.1 Bda01g00475 475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00475 198 PRINTS Transforming protein P21 ras signature 110 123 - -
Bda01g00475 198 PRINTS Transforming protein P21 ras signature 156 178 - -
Bda01g00475 198 PRINTS Transforming protein P21 ras signature 7 28 - -
Bda01g00475 198 PRINTS Transforming protein P21 ras signature 30 46 - -
Bda01g00475 198 PRINTS Transforming protein P21 ras signature 47 69 - -
Bda01g00475 198 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 198 - -
Bda01g00475 198 Pfam Ras family 8 179 IPR001806 GO:0003924|GO:0005525
Bda01g00475 198 Gene3D - 5 192 IPR027417 -
Bda01g00475 198 SMART rho_sub_3 9 181 IPR001806 GO:0003924|GO:0005525
Bda01g00475 198 SMART ras_sub_4 4 181 - -
Bda01g00475 198 PANTHER RHO FAMILY GTPASE 1 198 IPR003578 GO:0005525|GO:0007264
Bda01g00475 198 ProSiteProfiles small GTPase Rho family profile. 1 178 - -
Bda01g00475 198 CDD Rop_like 6 179 - -
Bda01g00475 198 TIGRFAM small_GTP: small GTP-binding protein domain 7 172 IPR005225 GO:0005525
Bda01g00475 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924|GO:0005525
Bda01g00475 198 ProSiteProfiles small GTPase Rab1 family profile. 2 198 - -
Bda01g00475 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 179 IPR027417 -
Bda01g00475 198 SMART rab_sub_5 7 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00475 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - cit:102612652 364.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00475 Bda08g01210 CCT
Bda01g00475 Bda01g01540 CCT
Bda01g01540 Bda01g00475 ECH
Bda01g00475 Bda08g01210 ECH
Bda01g00475 Bda01g01540 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00475 Bda-Chr1:31828017 Bda02g00435 Bda-Chr2:45014700 2.27E-115 dispersed
Bda07g01255 Bda-Chr7:15372682 Bda01g00475 Bda-Chr1:31828017 2.14E-12 dispersed
Bda06g00382 Bda-Chr6:6029148 Bda01g00475 Bda-Chr1:31828017 4.62E-96 transposed
Bda01g00475 Bda-Chr1:31828017 Bda01g01540 Bda-Chr1:51327942 1.62E-126 wgd
Bda01g00475 Bda-Chr1:31828017 Bda11g01828 Bda-Chr11:53522876 1.46E-111 wgd
Bda01g00475 Bda-Chr1:31828017 Bda14g00964 Bda-Chr14:7764966 4.35E-126 wgd
Bda01g00475 Bda-Chr1:31828017 Bda08g01210 Bda-Chr8:49620039 5.57E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00475 Bda_Chr01 FPKM 9.076305 13.518634 9.007035 7.626493 5.563678 2.704817 6.637853 2.587689 4.171211