Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00476 ATGGAGGTCGTTGTGGTTCCTCACAAACAAATCAAAACTCCGAAGCGATGCGCAAACTCTCGCTCTAATTCCTTCTTCTGCAGGCCCTCTGAAAATTTTGCTCCGAGTAACATCCATGGCGGATTCTCGTTTTATCCTCCGCCGTATCTGTCGTCTCCTTCGCTATCTTCGACTCATCACCAACAAATTCATGGGCAACCTCCTCTTCTTCCTTTGCCGATTCACCATCACTCTCTTCCTTCTCCAATCAGAGACTTCTCTTCCTCTCCTCCCAAGCCAGCTCAAAAAGTCCTCAAATATAGAGATCAATCTCTAACCCCGAAAAAATCCAAATCTCCAGGCAGAAATAAAGATCCCAAACCATATTTCAAATCGTCCACTAGCCCAGCCTCCGATCGCCTGATCAACGTATCGACTGCTTATATGGATCTTTCTAGTGTTTTACCGCCGTTACCGTCGTCATTATCATTTACAGAGAATGATTTTAGCAATGCTCTGTACTTAATCTATCTGGGTTTCATTGTATTCGTATCGGCTTGGATTGGCGTTGCTTTCTGGATGCAAACTGGGGAAAGACAAACAGCGCGTTTGCGATTGAAGTACCTTCGGGCAGTTTTAAAGAAGGATATTAATTTCTTCGACACTGTAGCAAGAGATTCTAATATTATTTTTCATCTTTCGAGCGACGCAATACTCGTGCAAGATGCGATAGGCGATAAGATGAAATTTGTAATGATAGTAATTTCACAGGTTCGTACAGTGTATTCCTTTGTAGGAGAGGATAAAGCAATTGAGGCATTTTCTAAGTCCCTGCAAAAAGCCCTCAAGCTTGGAAAGAAGAGTGGTTTTGCCAAAGGGGTAGGTGTAGGATTTACTTATGGTCTTCTGTTTTGTGCTTGGGCGTTGCTTCTTTGGTATGCCAGCATTCTCGTCAGACATCATGATACAAATGGAGGAAAAGCATTTACAACAATTATCAATGTCATATTCAGTGGCTTTGCGCTTGGTCAAGCAGCTCCAAACCTTGCTGCCATTGCAAAAGGGCGAGTAGCTGCAGCCAATATAGTTGGAATGATTGATGACCATTCTAAGTCATCTAAGAGAGTGGAAAATGGAGTGGTGTTATCAAAAGTAGAAGGGCAAATTGACTTCTGTGATGTTTGCTTTGCTTATCCTTCACGACCTCAAATGGTCCTCGACAAGTTGAATTTTTCGATTAGTGCTGGAAAAACCTTTGCAGTTGTAGGCGCCAGTGGGTCAGGAAAGAGCACCATTATTTCTCTGGTGCAACGTTTTTATGAACCATCCTCAGGTAACATACTGTTGGATGGACATGATTTAAGATCAATACAGCTAAAATGGCTGAGAGAACAAATGGGATTGGTCAGTCAAGAGCCAGCATTGTTCGCCACCACAATAGAAGGCAATATTCTGTTTAGTAAAGAAGATGCAGGAATGAACGAAATCGTAGAAGCGGCTAAAGCAGCGAATGCACATTCTTTTATTCAAGAACTACCTGAAGGGTATTATACTCAGGTGGGAGAGGGAGGGACTCAACTTTCCGGTGGGCAAAAGCAAAGAATTGCCATTGCAAGGGCAGTGTTGAGAAATCCTAAGCTTTTACTTCTTGATGAGGCAACTAGTGCTCTTGATGCAGAATCAGAACTTATTGTTCAGCAGGCATTGGATAGAATTATGTCAAATCGAACGACAATCATCATTGCACATCGACTGTCCACAATCCAAGATGTCGATACCATCATTGTGTTAAAAAATAGCCAGGTTGTTGAGAGTGGAACCCACGTGGAACTGATGGGAAGGAAAGGAGAATACGCAGCCTTGGTGAGCATGCAAGTAGCAGCTGAAAAGGGAAACTCTGAACCAATGTCTCCGGCAAGTTCCAGGCAGTCCAGCTTCCAAGAATCCCTCACTAGCCAGAACTATCTACCTGAGTTCAAGCCAATTATAATAACTGACTTGGAGCCAAGCAGTCAAAACATGTCGTTGCCAAACTCTTCCTCTGCTCCGTCAATCTGGGAGCTAGTAAAGTTAAATGCACCAGAGTGGCCATACGCACTACTCGGGTCAGTTGGAGCCATTCTTGCAGGAATCGAAGCTCCTTTATTTGCCCTTGGAATAACACATGTTTTGACTGCATTTTATTCTCCTCACAACGCCCAAATCAAAGTAGAAGTTCAACGGGTCGCTCTTCTATTTGTTGGAGTTGCCATTGTCACTATTCCTATATATCTGTTACAACATTACTACTATACATTGATGGGAGAACGACTCACTGCTCGTGTTCGCCTGAAGATGTTCTCAGCTATCCTATCAAATGAAATCGGATGGTTTGATTTTGACGACAACAACACTGGATCGTTGACATCAATTTTAGCAGCAGATGCAACATTAGTAAGAAGTGCTCTTGCAGATAGACTATCTACGATTGTGCAGAACATAGCCCTCACTGTCTCTGCCTTAGTTATTGCCTTCACATTAAGCTGGCGCATAGCAGCTGTCGTCGTAGCCTCCCTACCCCTTCTTATTGGAGCCTCAATTGCCGAGCAACTGTTTCTCAAGGGATTTGGAGGGGACTACAGTCGTACCTACAATAGAGCAACTTCCATTGGTCGGGAAGCTATTGTTAACATTCGTACAGTCGCTGCATTTGGTGCTGAAGATCGAATATTAACCCAGTTTGCCTCTGAACTGAGCCAACCAAACAAGCAAGCTCTGTTAAGAGGCCACATATCAGGCTTTGGCTATGGCTTAACTCAGCTATTGGCCTTCTGTTCCTACGCACTTGCCCTTTGGTATGCATCCATTCTGATCAACCATAAAGACTCGAATTTTGGAGACATAATGAAGTCTTTTATGGTTTTGATAATCACATCTCTGGCCATAGCAGAAACACTTGCTCTCACCCCAGATATTGTGAAGGGTACACAAGCACTAGGATCAGTTTTCGGTATTCTCCATAGAAAATCTGCTATTGACCCAAACAATCCTTCTTCACAGCTTATAATTGCAATCACAGGAGATATTGAGTTTCAGAATGTGAGTTTCAAGTACCCTGCAAGGCCAGATGTCTCCATTTTTGAGGATTTGAGCTTTAAAGTGTCCCCAGGAAAGAGTCTTGCTGTCGTGGGCCAAAGTGGGTCAGGAAAGAGCACAGTGATTTCTCTGGTCATGAGGTTTTACGATCCAAATTCAGGATTCATCATGATCGACGGGAGCAACATTAGACTCATGAATTTAAAAGCGTTGAGAAAGAAAATTGGTTTAGTTCAGCAAGAGCCAGCACTATTCTCCACAACAATCTACGAAAATATCAAATACGGGAAAGACGAAGCGTCGGAAATCGAAATAATGAAAGCAGCGAAAGCAGCAAACGCGCACGATTTCATCTGCAGAATGCCCGACGGTTACGACACCAGCGTCGGCGAGAGAGGAGTTCAACTATCGGGAGGACAGAAGCAGAGAGTCGCAATCGCCCGAGCCATACTAAAAGATCCATCGATTCTTCTTCTAGACGAAGCAACAAGCGCACTCGACGCGGCCTCCGAGAAGCTGGTACAGGAGGCTCTCAATTCACTCATGGAGGGGCGAACCACCATTATAGTGGCGCACAGGTTGACAACGGTTCGAAATGCAGATAGAATTGGGGTTTTGAAGAATGGCAGAATGGCTGAAATGGGAAGCCATGAGCAGCTCATGAGACAGTCCACAAGCTTATATAAACAGTTAATCAGTCTACAACGGGAACATGTTCATGATTAA 3780 43.84 MEVVVVPHKQIKTPKRCANSRSNSFFCRPSENFAPSNIHGGFSFYPPPYLSSPSLSSTHHQQIHGQPPLLPLPIHHHSLPSPIRDFSSSPPKPAQKVLKYRDQSLTPKKSKSPGRNKDPKPYFKSSTSPASDRLINVSTAYMDLSSVLPPLPSSLSFTENDFSNALYLIYLGFIVFVSAWIGVAFWMQTGERQTARLRLKYLRAVLKKDINFFDTVARDSNIIFHLSSDAILVQDAIGDKMKFVMIVISQVRTVYSFVGEDKAIEAFSKSLQKALKLGKKSGFAKGVGVGFTYGLLFCAWALLLWYASILVRHHDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGRVAAANIVGMIDDHSKSSKRVENGVVLSKVEGQIDFCDVCFAYPSRPQMVLDKLNFSISAGKTFAVVGASGSGKSTIISLVQRFYEPSSGNILLDGHDLRSIQLKWLREQMGLVSQEPALFATTIEGNILFSKEDAGMNEIVEAAKAANAHSFIQELPEGYYTQVGEGGTQLSGGQKQRIAIARAVLRNPKLLLLDEATSALDAESELIVQQALDRIMSNRTTIIIAHRLSTIQDVDTIIVLKNSQVVESGTHVELMGRKGEYAALVSMQVAAEKGNSEPMSPASSRQSSFQESLTSQNYLPEFKPIIITDLEPSSQNMSLPNSSSAPSIWELVKLNAPEWPYALLGSVGAILAGIEAPLFALGITHVLTAFYSPHNAQIKVEVQRVALLFVGVAIVTIPIYLLQHYYYTLMGERLTARVRLKMFSAILSNEIGWFDFDDNNTGSLTSILAADATLVRSALADRLSTIVQNIALTVSALVIAFTLSWRIAAVVVASLPLLIGASIAEQLFLKGFGGDYSRTYNRATSIGREAIVNIRTVAAFGAEDRILTQFASELSQPNKQALLRGHISGFGYGLTQLLAFCSYALALWYASILINHKDSNFGDIMKSFMVLIITSLAIAETLALTPDIVKGTQALGSVFGILHRKSAIDPNNPSSQLIIAITGDIEFQNVSFKYPARPDVSIFEDLSFKVSPGKSLAVVGQSGSGKSTVISLVMRFYDPNSGFIMIDGSNIRLMNLKALRKKIGLVQQEPALFSTTIYENIKYGKDEASEIEIMKAAKAANAHDFICRMPDGYDTSVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASEKLVQEALNSLMEGRTTIIVAHRLTTVRNADRIGVLKNGRMAEMGSHEQLMRQSTSLYKQLISLQREHVHD 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31830555 31837347 - Bda002478.2 Bda01g00476 476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00476 1259 Pfam ABC transporter transmembrane region 164 243 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 Pfam ABC transporter transmembrane region 247 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 Pfam ABC transporter transmembrane region 697 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1251 IPR003439 GO:0005524
Bda01g00476 1259 Pfam ABC transporter 399 548 IPR003439 GO:0005524
Bda01g00476 1259 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 153 242 - -
Bda01g00476 1259 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 435 581 - -
Bda01g00476 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 618 IPR027417 -
Bda01g00476 1259 Gene3D - 1006 1258 IPR027417 -
Bda01g00476 1259 Pfam ABC transporter 1034 1182 IPR003439 GO:0005524
Bda01g00476 1259 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 560 1253 - -
Bda01g00476 1259 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 247 482 - -
Bda01g00476 1259 SUPERFAMILY ABC transporter transmembrane region 162 355 IPR036640 GO:0005524|GO:0016021
Bda01g00476 1259 MobiDBLite consensus disorder prediction 102 118 - -
Bda01g00476 1259 Gene3D - 380 643 IPR027417 -
Bda01g00476 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 164 355 - -
Bda01g00476 1259 SMART AAA_5 1042 1228 IPR003593 -
Bda01g00476 1259 SMART AAA_5 408 600 IPR003593 -
Bda01g00476 1259 Gene3D ABC transporter type 1, transmembrane domain 123 246 IPR036640 GO:0005524|GO:0016021
Bda01g00476 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 617 IPR003439 GO:0005524
Bda01g00476 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1253 IPR027417 -
Bda01g00476 1259 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524
Bda01g00476 1259 CDD ABC_MTABC3_MDL1_MDL2 382 618 - -
Bda01g00476 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 560 1253 IPR039421 -
Bda01g00476 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 165 230 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 CDD ABC_MTABC3_MDL1_MDL2 1015 1253 - -
Bda01g00476 1259 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524
Bda01g00476 1259 Gene3D ABC transporter type 1, transmembrane domain 247 989 IPR036640 GO:0005524|GO:0016021
Bda01g00476 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 693 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda01g00476 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 247 482 IPR039421 -
Bda01g00476 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 153 242 IPR039421 -
Bda01g00476 1259 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 435 581 IPR039421 -
Bda01g00476 1259 MobiDBLite consensus disorder prediction 81 129 - -
Bda01g00476 1259 SUPERFAMILY ABC transporter transmembrane region 681 995 IPR036640 GO:0005524|GO:0016021
Bda01g00476 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 998 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00476 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100259227 1598.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00476 Bda05g01156 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00476 Bda-Chr1:31830555 Bda07g00087 Bda-Chr7:1110010 3.18E-122 dispersed
Bda01g01885 Bda-Chr1:55023449 Bda01g00476 Bda-Chr1:31830555 1.38E-22 dispersed
Bda02g00890 Bda-Chr2:49292772 Bda01g00476 Bda-Chr1:31830555 6.44E-50 dispersed
Bda15g00743 Bda-Chr15:10901153 Bda01g00476 Bda-Chr1:31830555 6.03E-69 dispersed
Bda01g00476 Bda-Chr1:31830555 Bda07g01146 Bda-Chr7:13594330 1.84E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g978 . . Bda01g00476 . . Bpe03g01223 . Bma10g00102 . Cmo14g00313 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1153 . . . Cme04g02389 Blo07g01329 . . Bda05g01156 . . . . . . . . . . Car14g00291 Cpe03g00276 . Bhi11g02325 . . . . . . Cla10g01794 Cam10g1850 Cec10g1904 Cco10g1877 Clacu10g1866 Cmu10g2616 Cre10g2004 Lsi03g01883 Csa03g03430 . .
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00476 Bda_Chr01 FPKM 26.844614 29.758102 10.368933 12.125769 11.814094 14.851261 14.380637 14.735457 15.851023