Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00477 ATGGGCGAGGGTTTCGTATTCGAAGCGCCCAGCGACGAAGAAGCTATCTACTCCGAGGTCGATACCGGCGACGAAGAACTCGAAGAAGATGAACTTCCTACTTCTCACCGCCGTACTGAATCTTCATGGGAATTCGGTTCCTACTATGGATCAGTCGACGAAGAACATGCGAGGCGCAACACTACCTCCATTGATTCCAAAATCACCAAAGCTCTCAAACAACGTTCTTTACCGTTTGATTCGTCAGTCGTTGACGATAACGAAAGCGTTGAATCGGAATCTGACGGACAAGAAAACTTCATACCAGAAGAAGAAGAAGACGACGACGACGGTGAAGTAGCTTGTGATGCAGGTGATAAGCAGCCCTTTTATGAGTATTTAGATGGAGCTTCTCTCCACGCCAATTCATTTATGGAGCTCCATCTTTCTCGCCCTTTACTTCGTGCTTGCGAAGCTTTGGGCTATTTAAAGCCTACGCCAATTCAGGCGACATGCATACCATTGGCAATTGCTGGGCGTGATATATGTGGGAGTGCCATTACTGGTTCGGGAAAGACAGCTGCTTACACATTGCCTATTTTGGAAAGGTTATACAATGCTCCAAAGCGCAGTCGAGCAATAAGAGCTCTAATTCTTACACCAACAAGAGAGTTGGCGGTTCAGGTTCATAGTATGATCGAGAAACTTGCACAGTTTACAGACATCAGATGTTGTCTGATCCTTGGTGGGGTTTCAATAAAGACTCAAGAGGCAGCTTTAAGGTCAATGCCAGACATTGTTGTGGCAACTCCTGGGCGCATGATAGATCATTTACAAAATTCTATGTCTGTTGATTTGGATGATCTTGCAATTCTTATTCTTGATGAGGCAGATAGACTCTTGGAGGATAATTTTGCAATGGAAACTAAAAGGCTGGTTTCCTTCTGTCCACGGAACAGACAAACAATGCTCTTCTCAGCTACAATGACAGACAAGGTTAATGAGCTTATCAAGCTTTCTTTAACCAATCCCTTGCGCCTCTCAGTTGATCCATCTATGAAACGGCCAGCAGCATTGACTGAGGAAATTGTTAGGATACGGAGAATGCGTGAAGCAAATCAGGAATCAGTTCTTTTTGCATTATGTTCGAAGACATACACTTCTAAAGTTATCATCTTCAGTAAAACAAAACAGGAAGCACACAGGTTAAAAATTTTATTTGGACTTACTGGCTTTAAAGCTGCCGAGCTTCATGGAAATCTTACACAAGTCCAGCGTCTTGATGCCTTGGAACTTTTCAGGAACCAGCAAGTTGATTTTCTGATTGCGACAGATGTAGCTGCTCGTGGACTCGACATTAAGGGTGTTCAAACAGTCATAAACTACGCATGCCCTCGTAATCTCACTAGCTACACTCATCGCGTGGGTCGAACAGCTAGAATTGGTAGGAAAGGACATGCTGTTACTTTTGTGCTCGATGACGATAGATCCCTTCTAAAATCAATTGCTAAAAAGGCTGGTGCAAAGCTGAAAAGCAGAAATGTAGCTGAACAATCAATAATTAAGTGGTCTCAGATAATCGAGCAAATGGAAGATCAAGTTAAAGAAATTTTGCAGGAAGAGAGCGAAGAGAGAGCACTGAGAAAAGCTGAAATGGAAGTAACAAAGGCAGAAAATATGATTGCTCATAAGGAGGAAATTTTTTCACGCCCTAAAAGAACGTGGTTTGTGACAGAAAAGGAGAAACGGCTTGTAGCAAAGGCGACAAAGGAAAGCTTGGAGAAGGCTAACAAGTCTGGGAAGGAGATACTCAGTGCACAAGCAGCTGAGGATTTAAAAGCCAAAGAAAAGAGGAAGCGTGAGCGGGAGAAGAATTTACCTCGGAGGAAGCGGAGAAAATTGGAAGCAGCTAGAGAAATGTTAGAAGAAAATAAGATCGGTGATATGGGAGGCAGTGGAAAAAATGAGGAAAAATCTGGAATGTCACTTGTTGACCTTGCATATAGACGTGCAAAAGCTGCAAAGGCTGCAAAAAAGGCAGTTGATTCGGGCAAGAATGTGAGGAAGGTAAGTGAATCCAAGCACCATTCTAAAAGATCAAAATCAAGGCCAGAAGAGATGAGAGAGTTGTTTCAGAGTGATATGAATGACAGAAAGCAGAAAAGAAATGACAGCAGTGCCGGGCGGAAAAAGTCAAAGAATTCATTTAAGAGCAAGTCAAGGTATAAGAGAAGGTAG 2217 42.94 MGEGFVFEAPSDEEAIYSEVDTGDEELEEDELPTSHRRTESSWEFGSYYGSVDEEHARRNTTSIDSKITKALKQRSLPFDSSVVDDNESVESESDGQENFIPEEEEDDDDGEVACDAGDKQPFYEYLDGASLHANSFMELHLSRPLLRACEALGYLKPTPIQATCIPLAIAGRDICGSAITGSGKTAAYTLPILERLYNAPKRSRAIRALILTPTRELAVQVHSMIEKLAQFTDIRCCLILGGVSIKTQEAALRSMPDIVVATPGRMIDHLQNSMSVDLDDLAILILDEADRLLEDNFAMETKRLVSFCPRNRQTMLFSATMTDKVNELIKLSLTNPLRLSVDPSMKRPAALTEEIVRIRRMREANQESVLFALCSKTYTSKVIIFSKTKQEAHRLKILFGLTGFKAAELHGNLTQVQRLDALELFRNQQVDFLIATDVAARGLDIKGVQTVINYACPRNLTSYTHRVGRTARIGRKGHAVTFVLDDDRSLLKSIAKKAGAKLKSRNVAEQSIIKWSQIIEQMEDQVKEILQEESEERALRKAEMEVTKAENMIAHKEEIFSRPKRTWFVTEKEKRLVAKATKESLEKANKSGKEILSAQAAEDLKAKEKRKREREKNLPRRKRRKLEAAREMLEENKIGDMGGSGKNEEKSGMSLVDLAYRRAKAAKAAKKAVDSGKNVRKVSESKHHSKRSKSRPEEMRELFQSDMNDRKQKRNDSSAGRKKSKNSFKSKSRYKRR 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31845981 31852497 - Bda002479.1 Bda01g00477 477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00477 738 Pfam Helicase conserved C-terminal domain 373 475 IPR001650 -
Bda01g00477 738 Coils Coil 598 619 - -
Bda01g00477 738 MobiDBLite consensus disorder prediction 599 651 - -
Bda01g00477 738 MobiDBLite consensus disorder prediction 80 112 - -
Bda01g00477 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 495 IPR027417 -
Bda01g00477 738 MobiDBLite consensus disorder prediction 86 112 - -
Bda01g00477 738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 514 IPR001650 -
Bda01g00477 738 MobiDBLite consensus disorder prediction 664 738 - -
Bda01g00477 738 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Bda01g00477 738 MobiDBLite consensus disorder prediction 1 40 - -
Bda01g00477 738 MobiDBLite consensus disorder prediction 691 724 - -
Bda01g00477 738 MobiDBLite consensus disorder prediction 14 29 - -
Bda01g00477 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 340 IPR014001 -
Bda01g00477 738 MobiDBLite consensus disorder prediction 664 683 - -
Bda01g00477 738 PANTHER RNA HELICASE 37 268 - -
Bda01g00477 738 PANTHER RNA HELICASE 290 714 - -
Bda01g00477 738 MobiDBLite consensus disorder prediction 621 645 - -
Bda01g00477 738 PANTHER BNAA01G17110D PROTEIN 37 268 - -
Bda01g00477 738 PANTHER BNAA01G17110D PROTEIN 290 714 - -
Bda01g00477 738 Coils Coil 513 560 - -
Bda01g00477 738 SMART ultradead3 154 355 IPR014001 -
Bda01g00477 738 Pfam DEAD/DEAH box helicase 159 329 IPR011545 GO:0003676|GO:0005524
Bda01g00477 738 CDD SF2_C_DEAD 371 484 - -
Bda01g00477 738 SMART helicmild6 390 475 IPR001650 -
Bda01g00477 738 CDD DEADc_DDX27 146 341 - -
Bda01g00477 738 Gene3D - 357 545 IPR027417 -
Bda01g00477 738 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 135 163 IPR014014 GO:0003724
Bda01g00477 738 Gene3D - 121 343 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00477 K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:3.6.4.13] - zju:107412453 938.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00477 Bda-Chr1:31845981 Bda09g01191 Bda-Chr9:42838768 3.90E-78 dispersed
Bda04g00150 Bda-Chr4:4178824 Bda01g00477 Bda-Chr1:31845981 2.82E-44 dispersed
Bda08g00011 Bda-Chr8:117464 Bda01g00477 Bda-Chr1:31845981 9.00E-62 dispersed
Bda01g00477 Bda-Chr1:31845981 Bda13g00716 Bda-Chr13:8551295 3.01E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1136 Blo01g01604 . Bda01g00477 . Bpe02g00342 . . Bma01g02375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010512 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00477 Bda_Chr01 FPKM 30.91555 35.186317 10.687633 10.088614 11.728923 12.324417 11.260756 2.412039 2.536082