Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00480 ATGGCTGGGAACTCTAGGTTTGATATGGACCAAAGAGACATCGATAGTTTTTTGAATACGACCATCGATAGTTTTATCGAAAATCGGCTGCTTGACAAACAAAAGCGAACCCAACAGAAAGAACAGTGTGCAGAGAGATTGGCTGCTGAAGACGGAAGCTCTGATAAAGATGAAGAGGTTAGATACTCTGATCAAGCTGTGTTGGCAAATTTGGATTGGGGAATTGAAGCTCTTGAGGAAGCCATTGACACTTTCAACATAGAAACCAAGCTTGCTCGATTGAACCACGCCGAGAAGATGTTACAAGTTTGTGCTCTATTGAACTCCAAAGACAAAACTGCTGGAATCCCAAATTTCTATCTTTCTGCATGGGCACATCTCAATCTTTCGTACCTGTGTAAACTGCGAGGAAATCTTCAGAATTCTGTTCTTCATGTTCTTGAGATGTTTTCGGTGGACCCTTTTTTCTCAAGGATCGATTTCGCCCCTGAACTTTGGAAACAAATTTTCGAGTCTTTGATCTTTTCACTAAGGCCTGATCAATTGGAGAAATTGCAAAAGTTAGAGCAAATTTATGGAGATTCATTAGATGAAAGCACTAAGCTTTATGCAAAATATTTCAAGGACTGCATGGATTCAGATTCAACCAAGAAGGTTTCACCAATGCTACCCATTGCAGAGCCACCAATGACTCCTCTTCATGAAGTGAGTTCTTCCATTCCAGATTTTGTAAAATTTGGACCCATCTTGCCTAAGAGCGCTGGGTTTGCTTCAATTATGAAATCCAAGAATGAGGCCAGAGAAGCAAGCAGCAGACTCGAAGTTAACTGTTCGCCAAAGAACCCAAACAACATTTCCAGGTGCGATGCTAAGAAGGACGTCTTGGTCGAGGAGAACGAAGACGAGTCTTACTACGAACCCAATGCTTGTTCTGTGGATCTACATGAAAATACATCTCATAAGTCATTATCTGTTTCCAGCCTGAAAATGGTGGAGGAAGAGCAAACAGAGACTAAAACAGGAGCATGTAATTCGAAGAATCATGAACATTATTTGACAATCTTTTCACCCATCGATTCCCCTTCGCCTCCTTCCCCAAACATTTTGTCTCCAAAAATGGAGGTACGAAGTAGAAAAGAACCTAGTTTATTGCGATTAAAGTCCAGCCGCATTGCTGATTCCAATGTCTCAACCTCTTTTCACGACTCTCCACGCTTAAGAAGTCACAGTACTAGTTCAGCAGACTCCGATAATGAAGAGGTGGTGATGAAGAACATTCGCAAGAAGAAACATAGTGGGTCCAAAAGAATGAACTTTGAAAATGTGAACAGACAAGCTATAGAAAATAGCTCCCGCTCCACTTGGGAACTTCAAGAGGGCAGCCAGAGCCACGATCAATTTTCATCATCAGACAACCTTGCTCATCGCCCTCGACTGCCAAAGGACTTTGTATGCCCAATAACTGGCCAGATTTTTTGTGACCCTGTTACACTTGAAACAGGTCAAACATATGAAAGAAAAGCAATACAGGAATGGGTGAAGAGAGGAAACACAACATGTCCTATTACACGACAGCCTCTTTCTTCATACACATTGCCAAAAACAAATTATGTTCTAAAGAGATTGATAACGTCTTGGAAAGAACAACACCCTGATCTAGCTCATGATAACTCACCAACAAACTCACTTGGCGTTTCCTGCACGAACGAGAGTCCATTGGCCTCCACTCCTTGCATAGAATTTTCAACCTGCCCCAAAACATATGAGCATCTAAGCCAAAAGAGTGAAAGTTTAATGCAAACAACTTTATCCAAATCACTGACAAGCGGAATATCTCAAGCCACAGTCAAAGCAATTATTATTGATTTGAAACCTTTAGTTTTGTGTCTGTGTACTTCAGAAAACTTGCAAGAGTGTGAAGCAGCTGTACTGGATATAGCAAGATTGTTGAAGGAATCAAAGGCTGACCCTGTGGTTCATTCTTTTTTAGCTGAGTCAACAGTTGTGAGTGGCTTTGTGGAAATTCTGTCAGCTTCTCTGGATAGAGAAGTTCTTAGAACGTCTGTTTATATTCTCTCAGAGCTAATATCTGCAGATAAAAGTGTCGTGGAGTCTCTTACAAGTGTAGACTCGGATTTTGATTGCCTGACTACTTTGCTGAAGAAAGGCCTAGCTGAAGCTGCTGTTCTTATTTACCAGTTGAGGCTTTCGTTTGTGCAGCTTTTCCGTCACGATCTAATACCATCTCTGGTTCAGATAATCCTGCGAAAAAATGAAGACTTGGATGATCTTAAATTTGTAATGGAGCCGAAGGATGGTGCAACAGAGCTGCTTGAGCAAATTTTGACGGGAGGGGATGAAAACAGTAGGTCTCTAAATGCTTTAGCTGTAATTTCCGCAAATGCAATTCCTGCCTTAATCAAGTGTTTGAATGGGGAGACTGTGAGGAGGTCAACAGTGAACATACTTTTATGTTGCATGCGAGCTGATAAAAGTTGCAGAAGCATAATAGCTTACAGAATTGAATCCACCCCCATACTAGAATTATTTCATGCAGGAAATGATGGCGAAAGAAGCATCTGCATAGATTTTCTCTCGGAGCTGGTTCAGTTGAACAGGAGGACATTATGCAATAACATGTTACAGAAAATTAGAGATGGAGGAGCATTTAGTACCATGCATGCGCTTCTTTTGTATCTTCAAATGGCTCCTATTGACCAGCAAACTTCCTCTGCTTCTCTTCTCCTGCAGTTGGATCTCCTGGTCGAGCCCCGGAAAATGAGCATTTACCGGGAAGAAGCTATAGACAGTCTTACTGAATCCATTCAGAGAAAGGACTTTGCTAATAGTCAAATGATCGCTTTGGATGCCTTGATATCTCTGACAGGGCGTTTCACTCCCTCAGGAAGGTCATACACCGAAGCCTGGTTACTTAAGCTCGCAGGGTTTGATCAACCTTACAATTCTATGATGAAGGCAGAGCGACTCAGTGGACACGACAAAGATTTTGTCGAGACAATGGAAGAGGAAGAAAAAGCTCTACGAATTTGGGAAAAAAGGTTATGCCTGGTACTCTGCAGTCATGACAAAGGCTCCATTGTCAAAGCATTGGGGGAAACCTTAAAGAGTAACTCTGTTGAGCTGGAGAAATCAAGTCTTCTAATTGCAACCTGGCTTTGCCACATGCTTTCATTTCTTCCCGACATCGGTACACAAGAAACTGCTCACAAGTCCTTCCTTCATCAACTCATCAATGTTCTTCAATCTTCGAAAAATCTGGAAGAGAGAATATTAGCGACCCTTGCTCTGAAAACTTTTATAAATGATCCAGCTGCACTTGAAGAACTGGGGGTGCATGCCAAAAGCATTTACAAAATCTTGAGAAAGATTAGGAGGAAAGCAGTAGTTGCAACTGATATATTAAAAGCCTTGATCACTTTGCCATCTGTTAATGTGGCGGAGCTCTGGCAATATACCGATGTTGCAGAGCTAGACTCATGCATTAATGGAGAAGTTCTGACCTTGATTTACCTTAAAGGTTTTCTTCTAAGTGGTCATTCTGATGGAACCATCAAGGTTTGGGGTGCAGGGAAGAGAACATTGAAGCTGGTTCAAGAAGCTCATCAACACACAAAAGCAGTAACATGCCTCATTGCCTCGACTTCTGGTGACATAGTATACAGCGGTTCACAGGACAAAACAATTCGGGTCTGGGCAGTCAAACATGAAGAAATTCAATGCATTCAAGTCCACGACGTGAAAGAGGCAGTACTCAACTTGACAGCCAATGTTAATGTAGCATGCTTTATCTCTCAAGGAGGAGTTAAGGTCTATAGCTGGAATGGGCTTCCTAAGCAGATAAATTTCAACAAATATGTCAAGTGCTTAACAATGTCAGAAGATAAACTCTATTGCGGCTGCTCAGACAGTATTCAGGAGGTGGATTTGTCCACACACACATCGACTGTATTCTACGCTGGAATTAGAAAATTATTGAGCAAGCAAACCATCTATTCCTTGCAAATTCATGATGGTCATCTCTATGCATGTGGTTCTTCTGTTGACGGAATAGCCGGAAAGATATTCTCCCTCTCCACCAAGGAAGTAGTAGGATCATTCTCAACCAGCATTGACATCCATAACATAGCCATAACCAGCGATTGCGTATTTACATCAACAAAAAGTGGAATCATAGAGCTATGGCAAAGAGAGAAATTTTCAAAAATGAATTCCATTAAAAAGGGTGGAGTTGGACATGCAAAAATTACATCCTTGACGACAGATTTGGACGGGGGATTGCTTTTCATCGGTTCCTCAGATGGAAATATTCAGGTTCGCACTTGA 4344 41.6 MAGNSRFDMDQRDIDSFLNTTIDSFIENRLLDKQKRTQQKEQCAERLAAEDGSSDKDEEVRYSDQAVLANLDWGIEALEEAIDTFNIETKLARLNHAEKMLQVCALLNSKDKTAGIPNFYLSAWAHLNLSYLCKLRGNLQNSVLHVLEMFSVDPFFSRIDFAPELWKQIFESLIFSLRPDQLEKLQKLEQIYGDSLDESTKLYAKYFKDCMDSDSTKKVSPMLPIAEPPMTPLHEVSSSIPDFVKFGPILPKSAGFASIMKSKNEAREASSRLEVNCSPKNPNNISRCDAKKDVLVEENEDESYYEPNACSVDLHENTSHKSLSVSSLKMVEEEQTETKTGACNSKNHEHYLTIFSPIDSPSPPSPNILSPKMEVRSRKEPSLLRLKSSRIADSNVSTSFHDSPRLRSHSTSSADSDNEEVVMKNIRKKKHSGSKRMNFENVNRQAIENSSRSTWELQEGSQSHDQFSSSDNLAHRPRLPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWVKRGNTTCPITRQPLSSYTLPKTNYVLKRLITSWKEQHPDLAHDNSPTNSLGVSCTNESPLASTPCIEFSTCPKTYEHLSQKSESLMQTTLSKSLTSGISQATVKAIIIDLKPLVLCLCTSENLQECEAAVLDIARLLKESKADPVVHSFLAESTVVSGFVEILSASLDREVLRTSVYILSELISADKSVVESLTSVDSDFDCLTTLLKKGLAEAAVLIYQLRLSFVQLFRHDLIPSLVQIILRKNEDLDDLKFVMEPKDGATELLEQILTGGDENSRSLNALAVISANAIPALIKCLNGETVRRSTVNILLCCMRADKSCRSIIAYRIESTPILELFHAGNDGERSICIDFLSELVQLNRRTLCNNMLQKIRDGGAFSTMHALLLYLQMAPIDQQTSSASLLLQLDLLVEPRKMSIYREEAIDSLTESIQRKDFANSQMIALDALISLTGRFTPSGRSYTEAWLLKLAGFDQPYNSMMKAERLSGHDKDFVETMEEEEKALRIWEKRLCLVLCSHDKGSIVKALGETLKSNSVELEKSSLLIATWLCHMLSFLPDIGTQETAHKSFLHQLINVLQSSKNLEERILATLALKTFINDPAALEELGVHAKSIYKILRKIRRKAVVATDILKALITLPSVNVAELWQYTDVAELDSCINGEVLTLIYLKGFLLSGHSDGTIKVWGAGKRTLKLVQEAHQHTKAVTCLIASTSGDIVYSGSQDKTIRVWAVKHEEIQCIQVHDVKEAVLNLTANVNVACFISQGGVKVYSWNGLPKQINFNKYVKCLTMSEDKLYCGCSDSIQEVDLSTHTSTVFYAGIRKLLSKQTIYSLQIHDGHLYACGSSVDGIAGKIFSLSTKEVVGSFSTSIDIHNIAITSDCVFTSTKSGIIELWQREKFSKMNSIKKGGVGHAKITSLTTDLDGGLLFIGSSDGNIQVRT 1447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31873021 31878915 + Bda002483.1 Bda01g00480 480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00480 1447 SMART Ubox_2 482 546 IPR003613 GO:0004842|GO:0016567
Bda01g00480 1447 Pfam U-box domain 480 550 IPR003613 GO:0004842|GO:0016567
Bda01g00480 1447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 170 - -
Bda01g00480 1447 CDD RING-Ubox_PUB 483 525 IPR045210 -
Bda01g00480 1447 MobiDBLite consensus disorder prediction 354 420 - -
Bda01g00480 1447 MobiDBLite consensus disorder prediction 450 474 - -
Bda01g00480 1447 ProSiteProfiles Trp-Asp (WD) repeats profile. 1207 1238 IPR001680 GO:0005515
Bda01g00480 1447 Gene3D - 1155 1324 IPR015943 GO:0005515
Bda01g00480 1447 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1207 1238 - -
Bda01g00480 1447 MobiDBLite consensus disorder prediction 388 419 - -
Bda01g00480 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 559 IPR013083 -
Bda01g00480 1447 Gene3D - 623 898 IPR011989 -
Bda01g00480 1447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 170 - -
Bda01g00480 1447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 171 1446 - -
Bda01g00480 1447 SUPERFAMILY WD40 repeat-like 1180 1445 IPR036322 GO:0005515
Bda01g00480 1447 Gene3D - 1326 1446 IPR015943 GO:0005515
Bda01g00480 1447 SUPERFAMILY RING/U-box 475 551 - -
Bda01g00480 1447 MobiDBLite consensus disorder prediction 450 473 - -
Bda01g00480 1447 Pfam WD domain, G-beta repeat 1208 1238 IPR001680 GO:0005515
Bda01g00480 1447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 171 1446 - -
Bda01g00480 1447 SMART WD40_4 1157 1195 IPR001680 GO:0005515
Bda01g00480 1447 SMART WD40_4 1200 1239 IPR001680 GO:0005515
Bda01g00480 1447 SMART WD40_4 1405 1447 IPR001680 GO:0005515
Bda01g00480 1447 SMART WD40_4 1366 1402 IPR001680 GO:0005515
Bda01g00480 1447 ProSiteProfiles U-box domain profile. 478 553 IPR003613 GO:0004842|GO:0016567
Bda01g00480 1447 SUPERFAMILY ARM repeat 622 1117 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00480 - - - pvy:116141867 1728.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00480 Bda-Chr1:31873021 Bda09g01144 Bda-Chr9:42193131 0 dispersed
Bda01g00480 Bda-Chr1:31873021 Bda09g00289 Bda-Chr9:3560169 5.99E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00480 Bda_Chr01 FPKM 39.346745 43.682247 14.447137 12.775196 20.813566 18.814434 19.96088 20.84116 20.54669