Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00500 ATGTCTGCTGTGGAAGTGGAGACGAAGGTCGAGGATGGAAAGGAGAAGAAATTAGAAAAGAGTGGAGAAGTATTGTTCTGTGGTGGAACGGATTGGGATGCAATCGGTCGGCGGAAAGGCCCTGATGGCAATTTAATCTCACCCACTCGGCTTCGTCCGCTAATCAATGTTGATATTCGATTTATTGCTTCTGGCTGCTCATCGTGCCATTGTGTGGCGTTGGACGTGGAAGGACGTTGCTATACATGGGGACGTAATGAGGCATCCTCTGTTTTTCAGAAAGGGCAGTTGGGTCATGGAGATAAGCTTCAGCGTGATAGGCCAACCGCGGTGTCTGCACTTGCGAAGTACAAAATTGTTAAAGCTGGAGCAGGTAGGAGTCATACTGTTGTAATCACTGACGAAGGCCATTCCCTATCCTTTGGCTGGAATAAACATGGGCAGTTAGGATCAGGTTCAACTAAAAACGAGACTGAACCCTATCCTGTTCGATGTCTTGTATCTGAAGTGACAACTACTGCTTGTGGGGGTGATTTCACTGTGTGGCTATCTGTTGTTGAAGGCGCTTCTATACTGACTGCCGGACTACCTCAATATGGACAACTTGGACATGGAACCGATAATGAGTACAATACTAAAGACAGCTCAGTGAGGCTTGCTTATGAAGCCCAACCACGCCCTAAAGCAATAGCTTCCCTTTCTGGAGAAATCATTGTCAAAGTTGCATGTGGAACTAACCATTCAGTGCTAATTGGCAGACTTGGACATAGAGAGCAGAAGGACGAGTGGGTCCCTCGCCGCGTTGATGTTTTTCAGAGGCAGAACGTGCTACCCCCTAATGCTGTTGTTTCAGCTGGTTCTGCTAACTCTGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGGAAAGTAAAGAATGCTGGTGATGACTGGATGTATCCCAAACCTCTCCTGGATTTAAGTGGATGGAATCTACGTTGCATGGATTCAGGCAATATGCACTTTTTCGTTGGGGCAGATAACTCTTGCATTAGTTGGGGTCATGCTCAGTATGGAGAGCTAGGATACGGCCCTAGTGGTCAGAAGTCTTCTGCAGTACCCAAAAAGGTTGAAATTTTAGAGGGAATGCATGTCATCAGTGTTGCGTGTGGCATGGGTCACTCCATGGTTATTGTTGATCGAACAGATGCTGCCGATCGACTTGATAAGACAGCTTTGGTTGGTCTATCTGATATATGGTTGTCTTGTGCAGAGACCGAGACACAGCAAAACAAATCTTCAGCTGTGAAGCAAACTGCAAAAAAGAATGCTAAAACCTCTGATAAATCAAGGAAGAAAAGGAAGTCAAAAGACTCGTCAGACTCCGAAGAAGAGAAAGAGGAAGAGGAAGAGGAAGATGAGGAGGAAGAGGAAGAGGAAGCGGACTCAGACATTAACAGCAGTGGGGAAGAGGAGAATGGGGAGGTGGAAATAAAAAGACAAAGGGGGAAAAAGGGGTCCAGAGGTCGAGGCAGGGGAAGTAATCAATCAGTAACGGACGGAAAAGGCAGTGGACGAGGACGAGGGCGTCCTGCAAAAACAAGTACACAATCTTCTGCAGTGAAAACTGGTAAGAGAGGTAGGCCCCGGAAGTCGTAA 1641 46.98 MSAVEVETKVEDGKEKKLEKSGEVLFCGGTDWDAIGRRKGPDGNLISPTRLRPLINVDIRFIASGCSSCHCVALDVEGRCYTWGRNEASSVFQKGQLGHGDKLQRDRPTAVSALAKYKIVKAGAGRSHTVVITDEGHSLSFGWNKHGQLGSGSTKNETEPYPVRCLVSEVTTTACGGDFTVWLSVVEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPKAIASLSGEIIVKVACGTNHSVLIGRLGHREQKDEWVPRRVDVFQRQNVLPPNAVVSAGSANSACTAGGGQLYMWGKVKNAGDDWMYPKPLLDLSGWNLRCMDSGNMHFFVGADNSCISWGHAQYGELGYGPSGQKSSAVPKKVEILEGMHVISVACGMGHSMVIVDRTDAADRLDKTALVGLSDIWLSCAETETQQNKSSAVKQTAKKNAKTSDKSRKKRKSKDSSDSEEEKEEEEEEDEEEEEEEADSDINSSGEEENGEVEIKRQRGKKGSRGRGRGSNQSVTDGKGSGRGRGRPAKTSTQSSAVKTGKRGRPRKS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31992077 31996821 - Bda002503.1 Bda01g00500 500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00500 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 382 392 IPR000408 -
Bda01g00500 546 Coils Coil 446 478 - -
Bda01g00500 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 241 251 IPR000408 -
Bda01g00500 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 186 IPR000408 -
Bda01g00500 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 395 IPR000408 -
Bda01g00500 546 MobiDBLite consensus disorder prediction 457 485 - -
Bda01g00500 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 135 IPR000408 -
Bda01g00500 546 MobiDBLite consensus disorder prediction 421 546 - -
Bda01g00500 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 189 254 IPR000408 -
Bda01g00500 546 SUPERFAMILY RCC1/BLIP-II 20 395 IPR009091 -
Bda01g00500 546 Pfam Regulator of chromosome condensation (RCC1) repeat 77 132 IPR000408 -
Bda01g00500 546 Pfam Regulator of chromosome condensation (RCC1) repeat 346 392 IPR000408 -
Bda01g00500 546 Pfam Regulator of chromosome condensation (RCC1) repeat 192 251 IPR000408 -
Bda01g00500 546 Pfam Regulator of chromosome condensation (RCC1) repeat 136 181 IPR000408 -
Bda01g00500 546 MobiDBLite consensus disorder prediction 421 435 - -
Bda01g00500 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 122 132 IPR000408 -
Bda01g00500 546 Gene3D - 253 445 IPR009091 -
Bda01g00500 546 Gene3D - 7 252 IPR009091 -
Bda01g00500 546 PANTHER PROTEIN RCC2 10 533 IPR028641 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00500 - - - zju:107420400 748.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00500 Bda-Chr1:31992077 Bda10g00373 Bda-Chr10:35262975 2.77E-14 dispersed
Bda01g00500 Bda-Chr1:31992077 Bda10g00412 Bda-Chr10:36339597 2.41E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32