Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00502 GAAAGACAAACTTACCCAGAGCATGTAGCACTTGCTCCTGATTTTGTAAAAGATGATAACCTGTCAGTTGGTTTTCGTGCAGCCCGGAAAACTAAGAAGCCCAAGCATGGAGATATGGCTTATGAAGGGGATGTTGATTGGGAGAACTTGACAGACGAGTCTGACTTTCTTGAAAATCATCGTGCAATGGAAAATGATCATTGTTTTAGAGAAGGAAGGGATTCTGGTCTAAATATTGTTATGGACACTGACAATGGCGGGGCGGCTGCAATATCAGTAGGACTGAAAGCTCATGCAGTTGGTCTGATTGAAAAAATTAGATTTAAAGAGGTCTTAAAACGAAAGGGTGGGCTTCAAGAGTATGTGGAAATGAGGAACCTGATCTTAGACCAATGGTTTAGAGATGTTACTCGTATTCTGCCCCTTTCTGATTGTGGGATCACAGATACTATCTCAACAGATGGAAAATTGCATGCTTCCCTCGTCAGAGAGATCTATTCGTTTCTCGATCAGAGTGGTTATATTAATTTTGGTATCGCTTCAGAGAGGGATATATCTGATCCAAGTCACAATAATATGGTTCTCAAAGAAAGAAATAACAAACACGTTACTGATTCTCTGGCTGCTGATGCAGACGATGGGGTTTCATTTATTATCGGGCACATTCGAAGTTCTGAAAAGAATGGTGTGACATTTGATGTGGAAGAGCCACTGGAAGCTACCAGAGGAAGAGACTTTACTTCTGAACTCAATTCAGAGATTCCGCATGTGAATGAGCTTCATGAACGTAGTCCTGTTGATTGTCTAGAAGGCAGCAGTGTTATTGTAAAAGAATCTAGGACATTAATTAGTGAGAATGTGCAGTGTAGTAATATATCTTGTGATACAATAGATTGTAAGTCTCCAACTAGCTTGATTCCTGATCTGACAAATGGATTGCCTTGCATTCATTCTTCCCCCAATCATTACCATCAGTCTGTAACAGAAATTGGAAAGAAAATCATTGTCATAGGAGCTGGTCCTGCTGGATTAACTGCTGCACGACATTTGCAACGTCAGGGTTTTAATGTCACAGTAATTGAAGCCAGGAGCAGATTAGGAGGTCGTGTTCACACTGATCGCAGTACGTTTTCAGTTCCCGTCGATCTTGGCGCAAGCATTATTACAGGTGTTGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGGTTTGTGCTCAGTTGGGCCTTGAGTTAACTGTGTTAAACAGTGACTGCCCTCTCTATGATATAGTAACTCGGCAAAAGGTTCCTGCAGATCTGGATGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGATATGGTATTACTTGTTGCTCAAAAGGGGGAACATTCTACGAGAGTGTCTCTTGAAGAGGGATTAGAATATGCTCTTGAGCAGCGGCGTATGGCACAATTGGGCAGGAATATTGAAGAAAACATGCTTAAAAGTTCTATAGACACCTTATCTACTTGTAAAAATATTTCTGTGAGTAAGTCTGCTAAGGAAGAGATTTTGAGTCCCCTCGAGAGGAGGGTTATGGACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTTTACTCAAGCAAGTATCTCTTCCGCATTGGAATCAGGATGATGTTTATGGAGGTTTTGGAGGAGCTCATTGCATGATCAAAGGAGGTTATAGCACTGTTATTGAGTCTCTTGGAGAAGGACTTAGCATTCATCTGAACCATTTAGTGACAGATATTTCTTATGATTTGGAGAATACTTGCCCAAAAGATGATTCTAGTGGGAAAGTGAAGGTTTCCACCTCAAATGGTAGTGTGTTCTTAGGAGATGCTGCCTTGGTCACAGTTCCTCTTGGGTGCTTAAAAGCAGAAACCATAAAGTTTTCTCCACCATTACCCCAGTGGAAGCAATCTTCTGTTCATCGCCTTGGTTTTGGAGTTCTTAATAAAGTTGTTTTGGAATTTCCCAAAGTTTTCTGGGATGACTCGGTTGATTACTTTGGAGCAACTGCTGAGGAAACAAACCGGAGAGGTCAGTGCTTTATGTTCTGGAATGTTAGGAAAACTGTCGGTGCTCCTGTTCTTATTGCATTAGTTGTTGGTAAGGCAGCTGTAGATGGGCAAAATCTAAGTTCTTCTGTTCACGTAAACCATGCATTAATGGTTCTTCGTAAACTTTTTGGAGAAACCGTGGTGCCTGATCCAGTTGCGTCTGTAGTAACTGAGTGGGGGAAGGATCCGTTTAGCTATGGTGCTTATTCATATGTTGCTGTTGGAGCATCTGGAGAGGATTATGATATTTTGGCCAGGCCTATTGGGAACTGTTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGTGGTGCAATGATGAGTGGTCTTCGGGAGGCAGTGCGGATTATCAATGTACTAAGTCATGGTTATGATTACATTGCAGAAGTCGATGCAATGGAGGCCGCTCAAAGACAATTTAACGGCGAAAAGGATGAATACAAGGACATATTAAGGAGACTTGATGCAGTAGAGCTTTCTAATGACCTGTATCATAATTCGCTTGGCACTGCCACAATTATGACGAGGGAGGATTTACTAAAGAATATGTTCTTTAATGCTAAAACCATGGCAGGGAGATTGTATCTGGCAAAAGAGTTATTGAATCTTTCTGTTGAAACACTGAAGTCATTTGCCGGGACCAAAGAAGGGCTTACTGTGCTCAATTTGTGGATACTGGATTCAATGGGGAAAGATGGGACCCAACTCTTGAGGCACTGTGTTCGACTGCTCGTGCTTGTTTCAACTGATCTATTTGCTGTGCGTATATCCGGTATTGGGAAAACTGTCAAAGAAAAGGTTTGCGTACATACAAGCCGTGATATACGCGCCATTGCAAGTCAGTTGGTTAGTGTTTGGCTTGAAGTCTTCCGTAAAGAAAAAGCTTCAAATGGTGGAACAAAATTACGGCCGCCAATTGCTGTTGATTCATCAAAACGAAAGTATCTTAAAGATTCTTCTGGAAAGCCCCCTTTGCATGCCAACTCTGGTGGCCCTGAAGGTAAAGGTGTGTTACAGACGTCTTATTGCAAACCGTTGAAACAAGACTTGGTAAGCAAACCAGAGATCAGCTCATCAAGGTCCAGAGGATCTCTGAGTGATGTGGATGCCGAGGAGGAAGGTGATAATGTTGCCATGTCTGAAGAAGAACAGGCTGCATTTGCTGCTGCTGTAGCAGCCCAGGCTGCACTTGCAGCTGCAGAGGCACGTGCATTTTCAGAAGGCAAGTGCAATACGACAGTGCAACTACCGAAGATACCCTCTTTTCATAAATTTGCCAGACGAGAGCAATACTCTCAGAGAGGTGAATGTGATATTCAGATGAGGTTCTCTGGCAATATTTTGGGAAAACAAGATAGTATATCTGAAATAGACTCAAGAAACTGCAAAGTAAGAAACTGGTCTGTTGATTTCTCGGCTGCTTGTATCAACCAATATAATTCAAGATTATCTGGTGAAAATCTCTCTCCGCAAAGCCATTCCAATGAAATCATTAGTCAGTTAAACTGTAGGGAACACTCTGGAGAAAGCATGGCTGTGGATAGTAGCATTTATACAAAAGCCTGGGTTGATACATCTGGTAGTGAGGGGATGAAGGATTATCATGATATCGAGAGATGGCAATCTCAAGCAGCTGCAGCCAGTAGTAATTTATTCTGGCCCCTTAGGCGTATAAAGGACGAGGAGGAATCAAACGCTACTTTAAAGGAAGCATTGTGGAGTGATAAAGTAGCAAATGAAAGCTTAGTTTCACAAGTTACGATGAGTAAGGAGTATGTAAAAGATTATTCCCGTGGAGCAGAGAAAATTAAACAGGCAGTTGTTGATTATGTTGCAACGTTGTTAATGCCTCTTTATAAAACAAAGAAAATTGACAAGGAGGGATACAAGTCAATAATGAAGAAAAGCGCCACTAAGGTTATGGAGCGGGCTACAGATGCAGAAAAAGCTATGGCTGTTCATGAGTTTCTTGATTTGAAACGTAGGAACAAGATTCGTCCCTTTGTTGACAAATTAATAGAGAGGCACATGGCAATGAATACAGTTGAGAAATAA 4152 41.76 ERQTYPEHVALAPDFVKDDNLSVGFRAARKTKKPKHGDMAYEGDVDWENLTDESDFLENHRAMENDHCFREGRDSGLNIVMDTDNGGAAAISVGLKAHAVGLIEKIRFKEVLKRKGGLQEYVEMRNLILDQWFRDVTRILPLSDCGITDTISTDGKLHASLVREIYSFLDQSGYINFGIASERDISDPSHNNMVLKERNNKHVTDSLAADADDGVSFIIGHIRSSEKNGVTFDVEEPLEATRGRDFTSELNSEIPHVNELHERSPVDCLEGSSVIVKESRTLISENVQCSNISCDTIDCKSPTSLIPDLTNGLPCIHSSPNHYHQSVTEIGKKIIVIGAGPAGLTAARHLQRQGFNVTVIEARSRLGGRVHTDRSTFSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELTVLNSDCPLYDIVTRQKVPADLDEALEAEYNSLLDDMVLLVAQKGEHSTRVSLEEGLEYALEQRRMAQLGRNIEENMLKSSIDTLSTCKNISVSKSAKEEILSPLERRVMDWHLANLEYGCAALLKQVSLPHWNQDDVYGGFGGAHCMIKGGYSTVIESLGEGLSIHLNHLVTDISYDLENTCPKDDSSGKVKVSTSNGSVFLGDAALVTVPLGCLKAETIKFSPPLPQWKQSSVHRLGFGVLNKVVLEFPKVFWDDSVDYFGATAEETNRRGQCFMFWNVRKTVGAPVLIALVVGKAAVDGQNLSSSVHVNHALMVLRKLFGETVVPDPVASVVTEWGKDPFSYGAYSYVAVGASGEDYDILARPIGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIINVLSHGYDYIAEVDAMEAAQRQFNGEKDEYKDILRRLDAVELSNDLYHNSLGTATIMTREDLLKNMFFNAKTMAGRLYLAKELLNLSVETLKSFAGTKEGLTVLNLWILDSMGKDGTQLLRHCVRLLVLVSTDLFAVRISGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGGTKLRPPIAVDSSKRKYLKDSSGKPPLHANSGGPEGKGVLQTSYCKPLKQDLVSKPEISSSRSRGSLSDVDAEEEGDNVAMSEEEQAAFAAAVAAQAALAAAEARAFSEGKCNTTVQLPKIPSFHKFARREQYSQRGECDIQMRFSGNILGKQDSISEIDSRNCKVRNWSVDFSAACINQYNSRLSGENLSPQSHSNEIISQLNCREHSGESMAVDSSIYTKAWVDTSGSEGMKDYHDIERWQSQAAAASSNLFWPLRRIKDEEESNATLKEALWSDKVANESLVSQVTMSKEYVKDYSRGAEKIKQAVVDYVATLLMPLYKTKKIDKEGYKSIMKKSATKVMERATDAEKAMAVHEFLDLKRRNKIRPFVDKLIERHMAMNTVEK 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32034795 32041120 + Bda002507.1 Bda01g00502 502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00502 1383 Gene3D - 334 814 IPR036188 -
Bda01g00502 1383 Pfam SWIRM domain 98 177 IPR007526 GO:0005515
Bda01g00502 1383 Gene3D - 440 771 - -
Bda01g00502 1383 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 35 1380 - -
Bda01g00502 1383 SUPERFAMILY FAD-linked reductases, C-terminal domain 654 765 - -
Bda01g00502 1383 PANTHER FLAVIN MONOAMINE OXIDASE 35 1380 - -
Bda01g00502 1383 ProSiteProfiles SWIRM domain profile. 86 186 IPR007526 GO:0005515
Bda01g00502 1383 Gene3D - 86 187 IPR036388 -
Bda01g00502 1383 PRINTS Adrenodoxin reductase family signature 333 355 - -
Bda01g00502 1383 PRINTS Adrenodoxin reductase family signature 356 369 - -
Bda01g00502 1383 Coils Coil 832 852 - -
Bda01g00502 1383 SUPERFAMILY Homeodomain-like 88 181 IPR009057 -
Bda01g00502 1383 Pfam Flavin containing amine oxidoreductase 342 816 IPR002937 GO:0016491
Bda01g00502 1383 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 913 999 IPR035441 -
Bda01g00502 1383 MobiDBLite consensus disorder prediction 1051 1074 - -
Bda01g00502 1383 MobiDBLite consensus disorder prediction 996 1034 - -
Bda01g00502 1383 SUPERFAMILY FAD/NAD(P)-binding domain 331 818 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00502 - - - qlo:115974445 1753.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00502 Bda-Chr1:32034795 Bda08g01179 Bda-Chr8:47266130 4.53E-95 dispersed
Bda07g01400 Bda-Chr7:16819529 Bda01g00502 Bda-Chr1:32034795 7.16E-06 dispersed
Bda08g00982 Bda-Chr8:19840341 Bda01g00502 Bda-Chr1:32034795 5.81E-06 dispersed
Bda01g00502 Bda-Chr1:32034795 Bda11g01044 Bda-Chr11:10240889 6.20E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15353 PF01593 Amino_oxidase 2.50E-106 CL0063 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00502 Bda_Chr01 FPKM 17.658333 23.914019 31.697269 24.916723 14.476954 18.24061 10.573245 0.0 0.0