Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00506 ATGAAGATCCAGTGCGATGTCTGCCAAAAAGAGGAGGCCTTACTTTTCTGCACCGCCGACGAGGCCGCCCTCTGCGACGCCTGCGACCACGTCGTCCACCACGCCAATAAACTCGTTTCTAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTTCTAACCTTCTACCCATCTGCGATGTCTGTCAGGAAAAAAGAGCTTTCTTGTTTTGTCGACAGGACAGAGTGATTTTATGCAGAGAGTGTGATTTTTCTCTTCACATGGCCAACGAGCATACGCAAAAACACTCTAGATTTCTTCTATCTGGTGTTAAGCTTTCTGCAACTTCCTCCTTCTACTCGTCGTCTTCTTCGTCTAACTCCTCTGCAACCATTAATGATACCGATTCAATGCAAAAGACTCTGTCTCCTCCTCCTCCGACAACCTCGCAGAACATGGCCATGGCGTATGATAATTGGGAATACTTGACAGAGACCGTTCCTGGTTGGCAATTCGAAGACCTTCTCCATCCTGTTTCTTCTCCTCCTTATGGTCTGTGTAAGAGCGGTAATGGCGATAATGTATTACCTTATCTGGATAATGAGAGTGGAAATATGGGATTATGGGTTCCTCAGATTCAGAAGCCATCTCCTCTGAATCTTGCACAGACGACTGGAGAAACTGGTTTGAAGGAGACAAAGGTAGCGACAGAAGCAAGCAGTAGAGGTAGAAAAGGAGGGTGGAAGCTCCGTTCTTCTTCTCCGACGCCGTTTTAA 753 47.14 MKIQCDVCQKEEALLFCTADEAALCDACDHVVHHANKLVSKHQRFSLLRPSSNLLPICDVCQEKRAFLFCRQDRVILCRECDFSLHMANEHTQKHSRFLLSGVKLSATSSFYSSSSSSNSSATINDTDSMQKTLSPPPPTTSQNMAMAYDNWEYLTETVPGWQFEDLLHPVSSPPYGLCKSGNGDNVLPYLDNESGNMGLWVPQIQKPSPLNLAQTTGETGLKETKVATEASSRGRKGGWKLRSSSPTPF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32057229 32058203 - Bda002511.1 Bda01g00506 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00506 250 ProSiteProfiles Zinc finger B-box type profile. 57 100 IPR000315 GO:0008270
Bda01g00506 250 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bda01g00506 250 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda01g00506 250 CDD Bbox1_BBX-like 57 100 - -
Bda01g00506 250 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 233 - -
Bda01g00506 250 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Bda01g00506 250 Pfam B-box zinc finger 56 95 IPR000315 GO:0008270
Bda01g00506 250 CDD Bbox1_BBX-like 5 47 - -
Bda01g00506 250 Gene3D Classic Zinc Finger 1 99 - -
Bda01g00506 250 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 233 - -
Bda01g00506 250 MobiDBLite consensus disorder prediction 215 250 - -
Bda01g00506 250 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda01g00506 250 MobiDBLite consensus disorder prediction 112 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00506 Bda01g01521 CCT
Bda01g00506 Bda08g01236 CCT
Bda01g00506 Bda01g01521 ECH
Bda01g01521 Bda01g00506 ECH
Bda01g00506 Bda08g01236 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00506 Bda-Chr1:32057229 Bda06g00954 Bda-Chr6:26410287 1.54E-62 dispersed
Bda01g00506 Bda-Chr1:32057229 Bda01g01521 Bda-Chr1:51110063 1.53E-71 wgd
Bda01g00506 Bda-Chr1:32057229 Bda11g01843 Bda-Chr11:53635914 6.74E-22 wgd
Bda01g00506 Bda-Chr1:32057229 Bda14g00989 Bda-Chr14:8030086 1.47E-22 wgd
Bda01g00506 Bda-Chr1:32057229 Bda14g00574 Bda-Chr14:4384124 8.38E-66 wgd
Bda01g00506 Bda-Chr1:32057229 Bda08g01236 Bda-Chr8:50639497 8.21E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15354 PF00643 zf-B_box 2.10E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00506 - - vvi:100264386 243.047